Phyre 2 alignment of P31455 with c1r5mA

Job Description P31455
Confidence 99.87% Date Thu Jan 5 11:47:46 GMT 2012

Rank 32 Aligned Residues 333

% Identity 7% Template c1r5mA_

PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2

Resolution 1.55 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	.	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H
Query Conservation																							.
Alig confidence																							.							.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	F	V	K	I	L	K	E	I	V	K	L	D	N	I	V	S	S	T	W	N	P	L	D	E	S	I	L	A	.	Y	G	E	K	N	S	V	A	R	L	A	R	I	V	E	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T
Template Known Secondary structure													S			S						S	S		T	T				.				T	B	T												.	.	.	.	.	.	.	.	.	.	.	.																		B
Template Predicted Secondary structure																														.																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.													.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E
Query Conservation
Alig confidence																																																			.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence	C	L	A	W	S	H	D	G	N	S	I	V	T	G	V	E	N	G	E	L	R	L	W	N	K	T	G	A	L	L	N	V	L	N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	.	.	.	.	.	.	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H
Template Known Secondary structure						T	T	S	S							T	T	S							T	T	S											S									T	T	S	S	.	.	.	.	.	.							T	T								T	T	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	E	L	K	G	S	L	G	V	D	V	E	W	V	D	D	D	K	F	V	I	P	G	P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T	G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S
Template Known Secondary structure								B	S							T	T							G	G	G							T	T		S	S		S							S	S									T	T	T	T							T	T	S							S	S	S	B	S
Template Predicted Secondary structure
Template SS confidence
	299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure															.	.	.	.	.	.																																																	.
Query SS confidence															.	.	.	.	.	.																																																	.
Query Sequence	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	.	.	.	.	.	.	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S
Query Conservation															.	.	.	.	.	.																																																	.
Alig confidence															.	.	.	.	.	.																																																	.
Template Conservation
Template Sequence	Q	N	C	F	Y	G	H	S	Q	S	I	V	S	A	S	W	V	G	D	D	K	V	I	S	C	S	M	D	G	S	V	R	L	W	S	L	K	Q	N	T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	G	Q	K	Y	A	V	A	F	M	D	G	Q	V	N	V	Y	D	L	K	K
Template Known Secondary structure	S							S	S									T	T	T							T	T	S							T	T	T	T									T	T										T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
	394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.

	373	.	.	.	.	.	.	380	.	.							.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.				.	.	.	.	.	.	410	.	.
Predicted Secondary structure											.	.	.	.	.	.																						.	.	.
Query SS confidence											.	.	.	.	.	.																						.	.	.
Query Sequence	G	E	V	E	Y	L	T	E	H	H	.	.	.	.	.	.	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	.	.	.	E	G	G	Q	L	W	I	T	E
Query Conservation											.	.	.	.	.	.																						.	.	.
Alig confidence											.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence	L	N	S	P	L	P	I	P	L	Y	A	S	Y	Q	S	S	Q	D	N	D	Y	I	F	D	L	S	W	N	C	A	G	N	K	I	S	V	A	Y	S	L	Q	E	G	S	V	V	A	I	P
Template Known Secondary structure																T	T												T	T	S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
	474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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