Job Description P31455 Confidence 99.54% Date Thu Jan 5 11:47:46 GMT 2012 Rank 103 Aligned Residues 304 % Identity 13% Template c1qfmA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protein (prolyl oligopeptidase); PDBTitle: prolyl oligopeptidase from porcine muscle Resolution 1.40 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E
Query Conservation
Alig confidence																																	.	.																			.	.	.																									.	.
Template Conservation																																	.	.																			.	.	.																									.	.
Template Sequence		D	D	G	T	V	A	L	R	G	Y	A	F	S	E	D	G	E	Y	F	A	Y	G	L	S	A	S	G	S	D	W	V	.	.	T	I	K	F	M	K	V	D	G	A	K	E	L	P	D	V	L	E	.	.	.	R	V	K	F	S	M	A	W	T	H	D	G	K	G	M	F	Y	N	A	Y	P	Q	Q	D	.	.
Template Known Secondary structure		S	S	S											T	T	S	S									T	T		S			.	.							T	T	T	T									.	.	.										T	T	S	S											S	.	.
Template Predicted Secondary structure																																	.	.																			.	.	.																									.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	.	.	.	.	.	.	.	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	.	.	.	.	Y	N	D	H	V	M	H	E	L	D	P	A	L	D
Query Conservation																																		.	.	.	.	.	.	.																								.	.	.	.
Alig confidence		.	.	.	.	.	.																											.	.	.	.	.	.	.																								.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	K	S	D	G	T	E	T	S	T	N	L	H	Q	K	L	Y	Y	H	V	L	G	T	D	Q	S	E	D	I	L	C	A	E	F	P	D	E	P	K	W	M	G	G	A	E	L	S	D	D	G	R	Y	V	L	L	S	I	R	E	G	D	P	V	N	R	L	W	Y	C	D	L	Q	Q	E
Template Known Secondary structure		.	.	.	.	.	.	S			S	S	S															T	T	S		G	G	G								T	T		T	T									T	T	S																					G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	T	G	I	L	K	W	V	K	L	I	D	N	F	E	G	E	Y	D	Y	V	T	N	E	G	T	V	F	T	F	K	T	N	R
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		S	S									S	S	S	S									T	T								T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270																																												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		H	S	P	N	Y	R	L	I	N	I	D	F	T	D	P	E	E	S	K	W	K	V	L	V	P	E	H	E	K	D	V	L	E	W	V	A	C	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	N	F	L	V	L	C	Y	L	H	.	D	V	K	N	T	L	Q	L	H
Template Known Secondary structure		T		T	T								T	T	B			G	G	G									S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T									.	T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																						.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.								.	.	.	390	.	.	.		.
Predicted Secondary structure																																				.	.	.	.	.																										.	.	.	.	.	.	.								.
Query SS confidence																																				.	.	.	.	.																										.	.	.	.	.	.	.								.
Query Sequence		S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	.	.	.	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	.	.	.	.	.	.	.	S	A	D	A	V	V	F	.	S
Query Conservation																																				.	.	.	.	.																										.	.	.	.	.	.	.								.
Alig confidence																																				.	.	.	.	.																										.	.	.	.	.	.	.								.
Template Conservation
Template Sequence		D	L	A	T	G	A	L	L	K	I	F	P	L	E	V	G	S	V	V	G	Y	S	G	Q	K	K	D	T	E	I	F	Y	Q	F	T	S	F	L	S	P	G	I	I	Y	H	C	D	L	T	K	E	E	L	E	P	R	V	F	R	E	V	T	V	K	G	I	D	A	S	D	Y	Q	T	V	Q	I	F	Y	P	S
Template Known Secondary structure			T	T	T											S	S									T	T		S									S	S										T	T	S	S	S												T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		395	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	G	Q	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	G	T	K	I
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions