Job Description P31455 Confidence 99.90% Date Thu Jan 5 11:47:46 GMT 2012 Rank 22 Aligned Residues 345 % Identity 11% Template c1nnoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa Resolution 2.65 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y
Query Conservation
Alig confidence																										.	.	.	.	.																				.	.
Template Conservation																										.	.	.	.	.																				.	.
Template Sequence		D	R	P	K	K	Q	L	N	D	L	D	L	P	N	L	F	S	V	T	L	R	D	A	G	.	.	.	.	.	Q	I	A	L	V	D	G	D	S	K	K	I	V	K	V	I	D	T	G	.	.	Y	A	V	H	I	S	R	M	S	A	S	G	R	Y	L	L	V	I	G	R	D	A	R	I	D	M	I	D	L	W
Template Known Secondary structure		G	S		S	S			S				G	G	G							G	G	G	T	.	.	.	.	.							T	T	T										S	.	.	S	S								T	T	S								T	T	S							S	S
Template Predicted Secondary structure																										.	.	.	.	.																				.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	.	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N
Query Conservation																																																						.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	E	P	T	K	V	A	E	I	K	I	G	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	V	E	S	S	K	F	K	G	Y	E	D	R	Y	T	I	A	G	A	Y	W	P	P	Q	F	A	I	M	D	G	E	T	L	E	P	K	Q	I	V	S	T	R	G	M	T	V	D
Template Known Secondary structure		S	S	S										S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	T	T		T	T	S									T	T							T	T	T														S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		182	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		V	Q	K	Q	H	P	R	.	.	.	.	.	.	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	T	Y	H	P	E	P	R	V	A	A	I	I	A	S	H	E	H	P	E	F	I	V	N	V	K	E	T	G	K	V	L	L	V	N	Y	K	D	I	D	N	L	T	V	T	S	I	G	A	A	P	F	L	H	D	G	G	W	D	S	S	H	R	Y	F	M	T	A	A	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S					S											S	S	S	S							T	T	T	T								T	T	T	T	S										S	S								T	T	S								G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	.	.	.	.	.	P	Q
Query Conservation																																																																											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	N	S	N	K	V	A	V	I	D	S	K	D	R	R	L	S	A	L	V	D	V	G	K	T	P	.	.	.	.	.	H	P	G	R	G	A	N	F	V	H	P	K	Y	G	P	V	W	S	T	S	H	L	G	D	G	S	I	S	L	I	G	T	D	P	K	N	H	P	Q	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	G	G	T							T	T	T	T									S	S	S	B	.	.	.	.	.			T	T							T	T	T								B	S	S	S	S									T	T	T		T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
												344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.						.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.									.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	.	.	.	.	.	.	.	.	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	.	.	.	.	.	.	.	A	N	S	P	S	A	D	A	V	V	F	S	P
Query Conservation																																		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	K	K	V	A	E	L	Q	G	Q	G	G	G	S	L	F	I	K	T	H	P	K	S	S	H	L	Y	V	D	T	T	F	N	P	D	A	R	I	S	Q	S	V	A	V	F	D	L	K	N	L	D	A	K	Y	Q	V	L	P	I	A	E	W	A	D	L	G	E	G	A	K	R	V	V	Q	P	E	Y	N	K
Template Known Secondary structure		B	T	S								S		S									T	T									T	T		S	S					T							T	T		T	T	S															S	S											S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.							.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		D	G	Q	W	L	A	W	M	E	.	.	.	.	.	.	G	G	Q	L	W	I	T	E	T	D
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	D	E	V	W	F	S	V	W	N	G	K	N	D	S	S	A	L	V	V	V	D	D	K
Template Known Secondary structure		S	S	S										T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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