Phyre 2 alignment of P31455 with c1nexD

Job Description P31455
Confidence 99.73% Date Thu Jan 5 11:47:46 GMT 2012

Rank 80 Aligned Residues 342

% Identity 11% Template c1nexD_

PDB info PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.																			.															.	.
Template Conservation																																							.	.	.	.	.	.	.																			.															.	.
Template Sequence	W	Y	N	P	K	F	V	P	Q	R	T	T	L	R	G	H	X	T	S	V	I	T	C	L	Q	F	E	D	N	Y	V	I	T	G	A	D	D	K	.	.	.	.	.	.	.	X	I	R	V	Y	D	S	I	N	K	K	F	L	L	Q	L	S	G	.	H	D	G	G	V	W	A	L	K	Y	A	H	G	G	.	.
Template Known Secondary structure				T	T												S	S	S									T	T							T	T	T	.	.	.	.	.	.	.							T	T	T	T									.		S	S									T	T	T	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.																			.															.	.
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.								.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.

	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	L	V	S	G	S	T	D	R	T	V	R	V	W	D	I	K	K	G	C	C	T	H	V	F	E	G	H	N	S	T	V	R	C	L	D	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	K	N	I	K	Y	I	V	T	G	S	R	D	N	T	L	H	V	W	K	L	P	K
Template Known Secondary structure							T	T	S							T	T	T	T										S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.																			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.

	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	.	.	.	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence	D	Y	P	L	V	F	H	T	P	E	E	N	P	Y	F	V	G	V	L	R	G	H	X	A	S	V	R	T	V	S	G	H	G	N	I	V	V	S	G	S	Y	D	N	T	L	I	V	W	D	V	A	Q	X	K	C	L	Y	I	L	S	G	H	T	D	R	I	Y	S	T	I	Y	D	H	E	R	K	R	C	I	S
Template Known Secondary structure							S		T	T	T		T	T									S	S									T	T							T	T	S							T	T	T	T										S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template Sequence	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	D	T	T	I	R	I	W	D	L	E	N	G	E	L	X	Y	T	L	Q	G	H	T	A	L	V	G	L	L	R	L	S	D	K	F	L	V	S	A	A	A	D	G	S	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S							T	T	T											S	S									S	S							T	T	S		.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template SS confidence
	588	.																															590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.

	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V	L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M
Query Conservation
Alig confidence																						.																																	.
Template Conservation																						.																																	.
Template Sequence	I	R	G	W	D	A	N	D	Y	S	R	K	F	S	Y	H	H	T	N	L	S	.	A	I	T	T	F	Y	V	S	D	N	I	L	V	S	G	S	E	N	Q	F	N	I	Y	N	L	R	S	G	K	L	V	H	.	A	N	I	L	K	D	A	D	Q	I	W	S	V	N	F	K	G	K	T	L	V	A	A	V	E
Template Known Secondary structure						T	T	T										T	T			.									S	S							T	T							T	T	T						.	S		T	T	T	T		S									T	T
Template Predicted Secondary structure																						.																																	.
Template SS confidence
	654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.		.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.		.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.

	404	.	.	.			.	.	410	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence	E	G	G	Q	.	.	L	W	I	T	E
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence	K	D	G	Q	S	F	L	E	I	L	D
Template Known Secondary structure	S	S	S
Template Predicted Secondary structure
Template SS confidence
	732	.	.	.	.	.	.	.	740	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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