Phyre 2 alignment of P31455 with c1l0qC

Job Description P31455
Confidence 99.24% Date Thu Jan 5 11:47:46 GMT 2012

Rank 121 Aligned Residues 279

% Identity 14% Template c1l0qC_

PDB info PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T	G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G
Query Conservation
Alig confidence												.	.	.	.	.																				.	.
Template Conservation												.	.	.	.	.																				.	.
Template Sequence	T	F	A	Y	I	A	N	S	E	S	D	.	.	.	.	.	N	I	S	V	I	D	V	T	S	N	K	V	T	A	T	I	P	V	G	.	.	S	N	P	X	G	A	V	I	S	P	D	G	T	K	V	Y	V	A	N	A	H	S	N	D	V	S	I	I	D	T	A	T	N	N	V	I	A	T	V	P	A	G	S
Template Known Secondary structure								G	G	G	T	.	.	.	.	.							T	T	T	T									S	.	.	S	S								T	T	S	S							T	T	T	T							T	T	T	T									S	S
Template Predicted Secondary structure												.	.	.	.	.																				.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	.	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H
Query Conservation																																								.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																																				.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template Sequence	S	P	Q	G	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	P	D	G	K	Q	V	Y	V	T	N	X	A	S	S	T	L	S	V	I	D	T	T	S	N	T	V	A	G	T	V	K	T	G	K	S	P	L	G	L	A	L	S	P	D	G	K	.	.	.	.	.
Template Known Secondary structure	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S	S							T	T	T	T							T	T	T	T									S	S	S								T	T	S	S	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template SS confidence
	75	.	.	.	.	80																						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P
Query Conservation
Alig confidence	.																				.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.																				.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	K	L	Y	V	T	N	N	G	D	K	T	V	S	V	I	N	T	V	T	.	.	K	A	V	I	N	T	V	S	V	G	R	S	P	K	G	I	A	V	T	P	D	G	T	K	V	Y	V	A	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	.							T	T	T	T							T	T	T	.	.	T										S	S								T	T	S	S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure	.																				.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G
Query Conservation
Alig confidence																																						.																																	.
Template Conservation																																						.																																	.
Template Sequence	D	S	X	S	I	S	V	I	D	T	V	T	N	S	V	I	D	T	V	K	V	E	A	A	P	S	G	I	A	V	N	P	E	G	T	K	A	.	Y	V	T	N	V	D	K	Y	F	N	T	V	S	X	I	D	T	G	T	N	K	I	T	A	R	I	P	V	G	P	D	P	.	A	G	I	A	V	T	P	D	G
Template Known Secondary structure	T	T	T							T	T	T	T									S	S									T	T	S	S			.							S	S									T	T	T	T										S	S		.							T	T	S
Template Predicted Secondary structure																																						.																																	.
Template SS confidence
	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.

	355	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence	K	K	V	Y	V	A	L	S	F	N	T	V	S	V	I	D	T	A	T	N	T	I	T	A	T	X	A
Template Known Secondary structure	S																T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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