Job Description P31455 Confidence 22.90% Date Thu Jan 5 11:47:46 GMT 2012 Rank 185 Aligned Residues 202 % Identity 6% Template c1ijqA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair Resolution 1.50 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	K	M	T	L	D	R	S	E	Y	T	S	L	I	P	N	L	R	N	V	V	A	L	D	T	E	V	A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	Y	D	T	V	I	S	R	D	I	Q	A	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G
Template Known Secondary structure							T	T	S									S		S	S								T	T	T	T							T	T	T	T														S	S		S									T	T	T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.											.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	.	.	.	.	.	.	.	.	.	.	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	S	V	A	D	T	K	G	V	K	R	K	T	L	F	R	E	N	G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	W	G	T	P	A	K	I	K	K	G	G	L	N	G	V	D	I	Y	S	L	V	T	E	N	I	Q	W	P	N	G	I	T	L	D	L	L	S	G	R	L	Y
Template Known Secondary structure								T	T	S	S	S								T	T										T	T	T	T								S	S	S								T	T	S									S	S		S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		359	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.
Predicted Secondary structure					.	.																																											.	.
Query SS confidence					.	.																																											.	.
Query Sequence		F	V	L	.	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	.	.	E	G	G	Q	L	W	I	T	E
Query Conservation					.	.																																											.	.
Alig confidence					.	.																																		.	.								.	.
Template Conservation																																								.	.
Template Sequence		W	V	D	S	K	L	H	S	I	S	S	I	D	V	N	G	G	N	R	K	T	I	L	E	D	E	K	R	L	A	H	P	F	S	L	A	V	F	.	.	E	D	K	V	F	W	T	D	I	I	N	E	A	I	F	S	A	N
Template Known Secondary structure					T	T	T	T							T	T	S		S								T	T	T	T	S	S								.	.	T	T							T	T	T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.			.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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