Job Description P60955 Confidence 2.13% Date Thu Jan 5 12:07:16 GMT 2012 Rank 76 Aligned Residues 119 % Identity 16% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Y	G	L	M	Y	L	V	G	F	I	F	A	M	W	L	A	T	R	R	A	N	R	P	G	S	G	.	.	.	W	T	K	N	E	V	E	N	L	L	Y	A	G	F	L	G	V	F	L	G	G	R	I	G	Y	V	L	F	Y	N	F	P	Q	F	M	A	D	P	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A
Template Known Secondary structure																				S	G	G	G	G			S	S	S	T	T				S	S																																T			T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	L	Y	L	F	R	V	W	D	G	G	M	S	F	H	G	G	L	I	G	V	I	V	V	M	I	I	F	A	R	R	T	K	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	Q	V	S	D	F	I	A	P	L	I	P	F	G	L	G	A	G	R	L	G
Query Conservation		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.								.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		X	S	T	T	X	F	H	W	.	.	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G
Template Known Secondary structure										.	.	S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		182	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions