Job Description P22634 Confidence 100.00% Date Thu Jan 5 11:39:02 GMT 2012 Rank 10 Aligned Residues 236 % Identity 26% Template c2jfzB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor Resolution 1.86 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	L	V	F	D	S	G	V	G	G	L	S	V	Y	D	E	I	R	H	L	L	P	D	L	H	Y	I	Y	A	F	D	N	V	A	F	P	Y	G	E	K	S	E	A	F	I	V	E	R	V	V	A	I	V	T	A	V	Q	E	R	Y	P	L	A	L	A	V	V	A	C	N	T	A	S	T	V	S	L	P	A
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		K	I	G	V	F	D	S	G	V	G	G	F	S	V	L	K	S	L	L	K	A	R	L	F	D	E	I	I	Y	Y	G	D	S	A	R	V	P	Y	G	T	K	D	P	T	T	I	K	Q	F	G	L	E	A	L	D	F	F	.	K	P	H	E	I	E	L	L	I	V	A	C	N	T	A	S	A	L	A	L	E	E
Template Known Secondary structure								S	S	G	G	G										T	T			S								T	T	T				T	T	S																	.	G	G	G	T		S													T
Template Predicted Secondary structure																																																											.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		L	R	E	K	F	D	F	P	V	V	G	V	V	P	A	I	K	P	A	A	R	L	T	.	.	.	A	N	G	I	V	G	L	L	A	T	R	G	T	V	K	R	S	Y	T	H	E	L	I	A	R	F	A	N	E	C	Q	I	E	M	L	G	S	A	E	M	V	E	L	A	E	A	K	L	H	G	E	D	V	S
Query Conservation																									.	.	.
Alig confidence																									.	.	.																										.
Template Conservation																																																					.
Template Sequence		M	Q	K	Y	S	K	I	P	I	V	G	V	I	E	P	S	I	L	A	I	K	R	Q	V	E	D	K	N	A	P	I	L	V	L	G	T	K	A	T	I	Q	S	N	A	Y	D	N	A	L	K	Q	.	Q	G	Y	L	N	I	S	H	L	A	T	S	L	F	V	P	L	I	E	E	S	I	L	E	G	E	L	L
Template Known Secondary structure					T		S	S					S	S														T	T	S														T									.	T	T										T	T							T	T			S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		L	D	A	L	K	R	I	L	R	P	W	L	R	M	K	E	P	P	D	T	V	V	L	G	C	T	H	F	P	L	L	Q	E	E	L	L	Q	V	L	P	E	.	.	.	.	.	.	G	T	R	L	V	D	S	G	A	A	I	A	R	R	T	A	W	L	L	E	H	E	A	P	D	A	K	S	A	D	A	N	I
Query Conservation																																											.	.	.	.	.	.
Alig confidence													.	.	.																												.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Sequence		E	T	C	M	H	Y	Y	F	T	P	L	.	.	.	E	I	L	P	E	V	I	I	L	G	C	T	H	F	P	L	I	A	Q	K	I	E	G	Y	F	M	G	H	F	A	L	P	T	P	P	L	L	I	H	S	G	D	A	I	V	E	Y	L	Q	Q	.	.	.	.	.	.	.	.	.	K	Y	A	L	P	K	V
Template Known Secondary structure										T	T		.	.	.		S			S						S	T	T	G	G	G	G												S			S	S																		.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure													.	.	.																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220										.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	C	M	A	M	T	P	G	A	E	Q	L	L	P	V	L	Q	R	Y	G
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		E	F	H	A	.	.	S	G	D	V	I	W	L	E	R	Q	A	K	E	W	L
Template Known Secondary structure						.	.	S	S													T
Template Predicted Secondary structure						.	.
Template SS confidence
		235	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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