Job Description P33591 Confidence 99.75% Date Thu Jan 5 11:52:16 GMT 2012 Rank 6 Aligned Residues 284 % Identity 12% Template c3fh6F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Resolution 4.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	R	Y	V	L	R	R	F	L	L	L	I	P	M	V	L	A	A	S	V	I	I	F	L	M	L	R	L	G	T	G	D	P	A	L	D	Y	L	R	L	S	N	L	P	P	T	P	E	M	L	A	S	T	R	T	M	L	G	L	D	Q	P	L	Y	V	Q	Y	G	T	W	L	W	K	A	L	H	L	D	F
Query Conservation
Alig confidence																														.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	T	L	I	L	S	S	A	G	L	Y	I	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	.	.	.	.	.	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	K	N
Template Known Secondary structure																											T			.	.	.	.	.							T	T	S	S	S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S											T				T
Template Predicted Secondary structure																														.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.														.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	I	S	F	A	S	Q	R	P	V	L	D	D	M	L	N	F	L	P	A	T	L	E	L	A	G	A	A	L	V	L	I	L	L	T	S	V	P	L	G	I	W	A	A	R	H	R	D	R	L	P	D	F	A	V	R	F	I	A	F	L	G	V	S	M	P	N	F	W	L	A	F	L	L	V	M	A	F	S	.
Query Conservation																																																																																	.
Alig confidence																																															.																																		.
Template Conservation																																															.
Template Sequence		F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M	V	L	A	C	L	V	Q	W	.	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q
Template Known Secondary structure		T					S		S	S	S		S																																T		.	S	S	S	S															S		S											S		S
Template Predicted Secondary structure																																															.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	Y	L	Q	W	L	P	A	M	G	Y	G	G	W	Q	H	I	I	L	P	A	V	S	I	A	F	M	S	L	A	I	N	A	R	L	L	R	A	S	M	L	D	V	A	G	Q	R	H	V	T	W	A	R	L	R	G	L	N	D	K	Q	T	E	R	R	H	I	L	R	N
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																																																						.
Template Sequence		S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A	W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	.	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P	L
Template Known Secondary structure		S	S	S										S	S					S	S	S	S																															.	S															S							T	T	T	T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.															.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		A	S	L	P	M	I	T	A	V	G	M	H	I	G	E	L	I	G	G	T	M	I	I	E	N	I	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	G	V	G	R	Y	A	V	S	A	I	F	N	R	.	.	.	.	D	Y	P	V	I	Q	C	F	T	L	M	M	V	V	V	F	V	V	C
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G	G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L
Template Known Secondary structure		T																	T										S	S		S			S	S		S	S	S			S	S										T	T		S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	I	V	D	L	L	N	A	A	L	D	P	R	I	R	R	H	E	G	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		A	I	V	N	L	.	.	.	.	.	.	.	.	K	A	T	R	M	K	F	D
Template Known Secondary structure							.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		502	.	.	.	.									.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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