Return to main results Retrieve Phyre Job Id

Job DescriptionP38521
Confidence21.98%DateThu Jan 5 11:58:12 GMT 2012
Rank5Aligned Residues34
% Identity18%Templated1nd9a_
SCOP infoPutative DNA-binding domain Putative DNA-binding domain N-terminal subdomain of bacterial translation initiation factor IF2
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90
Predicted Secondary structure 

















Query SS confidence 
















































Query Sequence  VDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLE
Query Conservation   
 


  



 
  

 
    

 
     

 


 
 

  

 
Alig confidence 










..............

.




















Template Conservation 







 

..............

. 

  
 

  

  

  

Template Sequence  VERLVQQFADA. . . . . . . . . . . . . . GI. RKSADDSVSAQEKQTLIDHLN
Template Known Secondary structure  ..............TS.

SSSS
TTGGG
Template Predicted Secondary structure  ..............

.










Template SS confidence 
















































   17..20....... .. 30.........40.........50
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions