Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Y	E	I	K	I	C	D	I	L	K	G	A	A	M	E	G	Q	Y	K	G	A	Q	R	G	A	K	C	E	E	I	A	N	E	L	T	R	R	G	V	K	N	N	K	G	E	V	I	T	K	G	G	V	S	H	W	L	E	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?					?		?		?	?	?	?	?	?	?	?	?	?	?	?	?												?		?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	R	E	P	N	F	D	T	L	A	E	L	C	D	M	F	G	V	Y	A	L	M	P	M	R	G	G	K	W	I	R	V	H	P	E	D	R	G	E	M	E	L	R	E	A	V	A	E	R	D	A	I	I	D	D	L	K	A	R	I
Secondary structure
SS confidence
Disorder																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	E	L	E	A	A	L	A	N	K	Q	V	P	A	E	A	E	E	M	G	G	E	K	V	E	E	V	A	A	E	Q	A	P	N	D	E	K	E	M	G	A	K	E	W	V	N	P	N	P	K	K	Y	S	V	G	M	L	C	Q	V
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?				?	?	?									?	?	?	?	?	?			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	A	A	M	G	G	E	Y	L	G	N	N	A	G	L	Q	Q	K	I	T	V	L	D	N	D	G	N	R	K	P	I	S	N	G	A	F	Y	R	L	I	E	Q	A	K	G	R	G	L	I	S	V	E	Q	E	I	K	H	K	K	D
Secondary structure
SS confidence
Disorder										?		?	?	?																	?	?																	?	?		?				?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Sequence		E	N	G	N	Q	I	G	K	G	K	K	G	D	K	L	I	T	L	L	P	N	W	I	D	K	L	G	D	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?															?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kpj chain A Region: 23 - 78 Aligned: 45 Modelled: 56 Confidence: 94.8% Identity: 27% PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a Phyre2 PDB 3op9 chain A Region: 49 - 130 Aligned: 76 Modelled: 82 Confidence: 92.8% Identity: 14% PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua Phyre2 PDB 1lli chain B Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 92.3% Identity: 20% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 3bs3 chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 91.9% Identity: 20% PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis Phyre2 PDB 3omt chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 91.5% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. Phyre2 PDB 1y7y chain A domain 1 Region: 24 - 78 Aligned: 44 Modelled: 55 Confidence: 91.2% Identity: 20% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 PDB 1utx chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 91.2% Identity: 3% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 PDB 2b5a chain A domain 1 Region: 24 - 78 Aligned: 44 Modelled: 55 Confidence: 90.1% Identity: 25% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 PDB 3f52 chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 90.0% Identity: 30% PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum Phyre2 PDB 1x57 chain A domain 1 Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 89.9% Identity: 20% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: EDF1-like Phyre2 PDB 3lis chain B Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 89.4% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) Phyre2 PDB 3ivp chain D Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 89.1% Identity: 17% PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. Phyre2 PDB 1y9q chain A domain 1 Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 88.9% Identity: 17% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Probable transcriptional regulator VC1968, N-terminal domain Phyre2 PDB 1adr chain A Region: 23 - 78 Aligned: 45 Modelled: 56 Confidence: 88.9% Identity: 20% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 3clc chain C Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 88.2% Identity: 13% PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator Phyre2 PDB 3trb chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 88.1% Identity: 33% PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii Phyre2 PDB 2r1j chain L domain 1 Region: 23 - 78 Aligned: 45 Modelled: 56 Confidence: 88.1% Identity: 20% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 2xcj chain B Region: 49 - 86 Aligned: 38 Modelled: 38 Confidence: 87.9% Identity: 26% PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 Phyre2 PDB 2eby chain A Region: 49 - 78 Aligned: 30 Modelled: 30 Confidence: 87.9% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli Phyre2 PDB 3r1f chain O Region: 30 - 78 Aligned: 43 Modelled: 49 Confidence: 87.8% Identity: 26% PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis Phyre2 1 c2kpjA_ 2 c3op9A_ 3 d1llib_ 4 c3bs3A_ 5 c3omtA_ 6 d1y7ya1 7 d1utxa_ 8 d2b5aa1 9 c3f52A_ 10 d1x57a1 11 c3lisB_ 12 c3ivpD_ 13 d1y9qa1 14 d1adra_ 15 c3clcC_ 16 c3trbA_ 17 d2r1jl1 18 c2xcjB_ 19 c2ebyA_ 20 c3r1fO_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kpjA_ 94.8 27 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 2 c3op9A_ 92.8 14 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 3 d1llib_ 92.3 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 4 c3bs3A_ 91.9 20 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 5 c3omtA_ 91.5 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 6 d1y7ya1 91.2 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 7 d1utxa_ 91.2 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 8 d2b5aa1 90.1 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 9 c3f52A_ 90.0 30 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 10 d1x57a1 89.9 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:EDF1-like 11 c3lisB_ 89.4 16 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 12 c3ivpD_ 89.1 17 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 13 d1y9qa1 88.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 14 d1adra_ 88.9 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 15 c3clcC_ 88.2 13 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 16 c3trbA_ 88.1 33 PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii 17 d2r1jl1 88.1 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 18 c2xcjB_ 87.9 26 PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 19 c2ebyA_ 87.9 17 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli 20 c3r1fO_ 87.8 26 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 21 d1lmb3_ not modelled 87.4 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 22 d1rioa_ not modelled 86.7 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 23 c2jvlA_ not modelled 86.6 20 PDB header:transcription Chain: A: PDB Molecule:trmbf1; PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei 24 c3cecA_ not modelled 86.3 17 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 25 c3mlfC_ not modelled 86.0 10 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 26 c3dnvB_ not modelled 85.9 10 PDB header:transcription/dna Chain: B: PDB Molecule:hth-type transcriptional regulator hipb; PDBTitle: mdt protein 27 c2ewtA_ not modelled 85.4 33 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 28 d1b0na2 not modelled 84.0 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 29 c3bdnB_ not modelled 82.2 23 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 30 c3eusB_ not modelled 80.6 10 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 31 d2icta1 not modelled 80.3 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 32 c1b0nA_ not modelled 79.9 17 PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex 33 d2croa_ not modelled 79.4 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 34 d1sq8a_ not modelled 79.1 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 35 c3f6wE_ not modelled 78.0 17 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 36 c2ef8A_ not modelled 75.9 19 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is 37 d1r69a_ not modelled 75.1 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 38 c3t76A_ not modelled 73.2 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 39 c3b7hA_ not modelled 70.3 27 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 40 c3kxaD_ not modelled 70.0 17 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 41 d2a6ca1 not modelled 68.3 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 42 d2ofya1 not modelled 65.2 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 43 c2o38A_ not modelled 64.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 44 d2o38a1 not modelled 64.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 45 c1y9qA_ not modelled 62.9 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 46 d1r8ja1 not modelled 42.1 47 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 47 d1sv1a_ not modelled 38.9 53 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 48 d1v2za_ not modelled 38.3 53 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 49 c2bnoA_ not modelled 36.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 50 d1r89a3 not modelled 33.3 78 Fold:Ferredoxin-like Superfamily:PAP/Archaeal CCA-adding enzyme, C-terminal domain Family:Archaeal tRNA CCA-adding enzyme 51 c2qfcB_ not modelled 28.2 18 PDB header:transcription regulation Chain: B: PDB Molecule:plcr protein; PDBTitle: crystal structure of bacillus thuringiensis plcr complexed with papr 52 c1r8jB_ not modelled 26.6 47 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 53 c2axzC_ not modelled 25.4 15 PDB header:transcription Chain: C: PDB Molecule:prgx; PDBTitle: crystal structure of prgx/ccf10 complex 54 d1e9ma_ not modelled 22.7 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 55 c3ci9B_ not modelled 22.1 50 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 56 c2fjrB_ not modelled 17.5 17 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 57 d1u04a2 not modelled 15.4 45 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 58 d1fpoa2 not modelled 15.3 31 Fold:Open three-helical up-and-down bundle Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain Family:HSC20 (HSCB), C-terminal oligomerisation domain 59 d1r5qa_ not modelled 14.1 50 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 60 d1xlqa1 not modelled 12.5 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 61 d2ebfx2 not modelled 11.0 41 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 62 c3rylB_ not modelled 9.8 62 PDB header:protein binding Chain: B: PDB Molecule:protein vpa1370; PDBTitle: dimerization domain of vibrio parahemolyticus vopl 63 c2wlbB_ not modelled 9.2 13 PDB header:electron transport Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial; PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria 64 c2is8A_ not modelled 9.2 21 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 65 d1sv6a_ not modelled 8.9 21 Fold:FAH Superfamily:FAH Family:FAH 66 d1hywa_ not modelled 8.7 47 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 67 d1b4ub_ not modelled 8.6 53 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 68 c2zvnF_ not modelled 8.5 37 PDB header:signaling protein/transcription Chain: F: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group 69 d1grja1 not modelled 8.5 47 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 70 d1ejxb_ not modelled 7.9 38 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 71 c3swfA_ not modelled 7.7 30 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 72 c2v4hA_ not modelled 7.7 37 PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex 73 c2ppxA_ not modelled 7.4 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 74 d2ppxa1 not modelled 7.4 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 75 d1ob8a_ not modelled 7.4 24 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 76 c2re3A_ not modelled 7.3 40 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 77 c2kddB_ not modelled 7.2 24 PDB header:cell cycle Chain: B: PDB Molecule:borealin; PDBTitle: solution structure of the conserved c-terminal dimerization2 domain of borealin 78 d4ubpb_ not modelled 6.9 34 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 79 c2ib1A_ not modelled 6.8 25 PDB header:apoptosis Chain: A: PDB Molecule:death domain containing membrane protein nradd; PDBTitle: solution structure of p45 death domain 80 d2bt6a1 not modelled 6.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 81 c3fmyA_ not modelled 6.6 13 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 82 c2w4sD_ not modelled 6.5 24 PDB header:structural protein Chain: D: PDB Molecule:ankyrin-repeat protein; PDBTitle: novel rna-binding domain in cryptosporidium parvum at 2.52 angstrom resolution 83 c2of5A_ not modelled 6.4 21 PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex 84 c3r3kA_ not modelled 6.3 54 PDB header:de novo protein Chain: A: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 85 c3r3kB_ not modelled 6.3 54 PDB header:de novo protein Chain: B: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 86 c3r3kC_ not modelled 6.3 54 PDB header:de novo protein Chain: C: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 87 d1jwya1 not modelled 6.3 71 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 88 c3lxfC_ not modelled 6.1 29 PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans 89 d3bz7a1 not modelled 6.0 71 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 90 d1e9ya1 not modelled 6.0 28 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 91 d2f23a1 not modelled 6.0 35 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 92 c2yqfA_ not modelled 5.8 17 PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1 93 c1l8dB_ not modelled 5.7 38 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 94 c1r48A_ not modelled 5.5 54 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 95 d2gf5a1 not modelled 5.5 21 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 96 c3ri2B_ not modelled 5.3 25 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243 97 c1xmaA_ not modelled 5.2 14 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulator; PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833 98 d1xmaa_ not modelled 5.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 99 d1jnda2 not modelled 5.1 38 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0