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Job DescriptionP0AG14
Confidence98.11%DateThu Jan 5 11:27:48 GMT 2012
Rank90Aligned Residues165
% Identity16%Templatec2pg8C_
PDB info PDB header:ligand binding proteinChain: C: PDB Molecule:dpgc; PDBTitle: crystal structure of r254k mutanat of dpgc with bound substrate analog
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100........ .110.........120.........130....... ..140....... ..150.......
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Query Sequence  DSKPRVWVLDF. KGSMDAHEVNSLREEITAVLAAFKPQDQV. VLRLESPGGM. . . . . . . . . . VHGYGLAASQ. . . . . . . .
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Template Sequence  ERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVD
Template Known Secondary structure  TT

TTTTT
B
TT
TT


B

SGGGTT
B


B
T


TTT
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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   158.160.........170.........180.........190.........200.........210..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . LQRLRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNR
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Template Sequence  FLMRKELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIP. . .
Template Known Secondary structure  TT


TTSTTTTT
S


SS
TTTS
STT




SSS


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   250.........260.........270.........280.........290.........300.........310.........320......
 
   213......220.........230.........240.........250.........260.........270.........280.........290..
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Query Sequence  FLKSKDIDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVATGEHWYGQQAVEKGLVD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GAANLRLGRFAGPRV. . . SRQVILEGRRIWAKEPEARLLVD
Template Known Secondary structure  .......................................TT...TS


TTSGGGGGT
S
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   327..330.........340. ........350.........360....
 
   293. .....300.......
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Query Sequence  EI. . . NTSDEVILSLMEG
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Template Sequence  EVVEPDELDAAIERSLTR
Template Known Secondary structure 
TTTGG
Template Predicted Secondary structure 

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   365....370.........380..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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