Job Description P30177 Confidence 100.00% Date Thu Jan 5 11:46:14 GMT 2012 Rank 6 Aligned Residues 289 % Identity 18% Template c3h5qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus Resolution 1.94 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		K	I	I	K	E	I	G	R	G	K	N	H	A	R	D	L	D	R	D	T	A	R	G	L	Y	A	H	M	L	N	G	E	V	P	D	L	E	L	G	G	V	L	I	A	L	R	I	K	G	E	G	E	A	E	M	L	G	F	Y	E	A	M	Q	N	H	T	I	K	L	T	P	P	A	.	.	G	K	P	M	P
Query Conservation																																																																											.	.
Alig confidence											.	.	.	.																																																													.	.
Template Conservation											.	.	.	.
Template Sequence		D	I	I	E	K	K	R	D	G	.	.	.	.	H	T	L	T	T	E	E	I	N	F	F	I	G	G	Y	V	K	G	D	I	P	D	Y	Q	A	S	S	L	A	X	A	I	Y	F	Q	D	X	N	D	D	E	R	V	A	L	T	X	A	X	V	N	S	G	D	X	I	D	L	S	D	I	K	G	V	K	V	D
Template Known Secondary structure									T	T	.	.	.	.																		T	S	S																															T	T	S						T	T	S		S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160
Predicted Secondary structure																																																					.																								.
Query SS confidence																																																					.																								.
Query Sequence		I	V	I	P	S	Y	N	G	A	R	K	Q	A	N	L	T	P	L	L	A	I	L	L	H	K	L	G	F	P	V	V	V	H	G	V	S	E	D	P	T	R	V	L	T	E	T	I	F	E	L	M	.	G	I	T	P	T	L	H	G	G	Q	A	Q	A	K	L	D	E	H	Q	P	V	F	M	.	P	V	G	A
Query Conservation																																																					.																								.
Alig confidence											.	.	.	.																																							.																								.
Template Conservation											.	.	.	.
Template Sequence		K	H	S	T	G	G	V	G	D	.	.	.	.	T	T	T	L	V	L	A	P	L	V	A	A	V	D	V	P	V	A	K	X	S	G	R	G	L	G	H	T	G	G	T	I	D	K	L	E	A	I	D	G	F	H	V	E	I	D	E	A	T	F	V	K	L	V	N	E	N	K	V	A	V	V	G	Q	S	G	N
Template Known Secondary structure								T	T		.	.	.	.													T	T											S	S	S	S								T	T	S	T	T																		S								S	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		F	C	P	P	L	E	K	Q	L	A	M	R	W	R	M	G	V	R	N	S	A	H	T	L	A	K	L	A	T	P	F	A	E	G	E	A	L	R	L	S	S	V	S	H	P	E	Y	I	G	R	V	A	K	F	F	S	D	I	G	.	G	R	A	L	L	M	H	G	T	E	G	E	V	Y	A	N	P	Q	R	C
Query Conservation																																																													.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	P	A	D	K	K	L	Y	A	L	R	D	V	T	G	T	V	N	S	I	P	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	X	S	K	K	I	A	A	G	A	D	A	I	V	L	D	V	K	T	G	S	G	A	F	X	K	T	L	E	D	A	E	A	L	A	H	A	X	V
Template Known Secondary structure		S													T	T	T		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T		S									S	T	T	S	S	B		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.															.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		P	Q	I	N	L	I	D	R	E	G	M	R	V	L	Y	E	K	Q	D	T	A	G	S	E	L	L	P	Q	A	K	D	P	E	T	T	A	Q	W	I	E	R	C	L	A	G	S	E	P	.	.	I	P	E	S	L	K	I	Q	M	A	C	C	L	V	A	T	G	E	A	A	T	I	S	D	G	L	A	R	V	N
Query Conservation																																																		.	.
Alig confidence																								.	.	.	.	.																						.	.
Template Conservation																								.	.	.	.	.
Template Sequence		R	I	G	N	N	V	G	R	N	T	X	A	I	I	S	D	X	N	Q	P	L	G	.	.	.	.	.	R	A	I	G	N	A	L	E	L	Q	E	A	I	D	T	L	K	G	Q	G	P	K	D	L	T	E	L	V	L	T	L	G	S	Q	X	V	V	L	A	N	K	A	E	T	L	E	E	A	R	A	L	L	I
Template Known Secondary structure								T											S	S		S	S	.	.	.	.	.	S				S												T	T		S																			T	T	S		S	S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		318	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		298	.	300

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions