 |
Job Description | P30177 | Confidence | 34.23% | Date | Thu Jan 5 11:46:14 GMT 2012 |
Rank | 59 | Aligned Residues | 86 |
% Identity | 8% | Template | c3eegB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:2-isopropylmalate synthase; |
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
|
Resolution | 2.78 Å |
|
 |
  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
|
|
. | . | . | . | |
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . |  |  |  |  | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
| . |
. |
Query Sequence |   |
G | E | A | E | M | L | G | F | Y | E | A | M | Q | N | H | T | I | K | L | T | P | P | A | G | K | P | M | P | I | V | I | P | S | Y | N | G | A | R | K | Q | A | N | L | T | P | L | L | A | I | L | L | H | K | L | G | F | P | V | V | V | H | G | V | S | E | D | P | T | R | V | L | . |
. |
. |
T | E | T | I | . |
. |
Query Conservation |   |
|   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |
|   |
|
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |
|   |
| . | . | . |
|
|
|
| . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
| . | . |
Template Conservation |   |
  |
|   |   |   |   |   |
|
|   |   |
|   |   |   | . | . | . | . | . |   |   |   |   |   |   |
|   |
|   |   |
| . | . | . | . |   |
|
|   |   |
|
|
|   |
|
|   |
|   |
|   |   |
|
|
|   |   |
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |   |   |
|   |
|
|   |
Template Sequence |   |
L | P | W | Q | Y | G | E | R | I | K | Y | L | X | D | N | . |
. |
. |
. |
. |
V | S | N | I | D | K | A | I | L | S | A | H | . |
. |
. |
. |
C | H | N | D | L | G | L | A | T | A | N | S | L | A | A | L | Q | N | G | A | R | Q | V | E | C | T | I | N | G | I | G | E | R | A | G | N | T | A | L | E | E | V | V | X |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
| T | T | G | G | G | S |  |  |  |  |  | . | . | . | . |
| B |
| S | S | S |
|  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  | B | G | G | G |
|
| S | T | T |
| B |
| B |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
F | E | L | M | G | I | T | P | T | L | H | G | G | Q | A | Q | A | K | L | D |
Query Conservation |   |
. | . | . | . | . |
|
|   |
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |
Template Sequence |   |
A | X | E | C | H | K | E | T | L | G | L | E | T | G | I | N | H | K | K | L | V | P | I | S | H |
Template Known Secondary structure |   |
 |  |  | T | T |  |  |  |  |
|  |  |
| S |
|
| G | G | G |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|