Job Description P30177 Confidence 26.40% Date Thu Jan 5 11:46:14 GMT 2012 Rank 75 Aligned Residues 204 % Identity 13% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query SS confidence																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query Sequence		I	K	E	I	G	R	G	K	N	H	A	R	D	L	D	R	D	T	A	R	G	L	Y	A	H	.	.	.	.	M	L	N	G	E	V	P	D	L	E	L	G	G	V	L	I	A	L	R	I	.	.	.	.	.	.	.	.	K	G	E	G	E	A	E	M	.	.	.	.	.	.	L	G	F	Y	E	A	M	Q	N
Query Conservation																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Alig confidence																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	S	A	L	R	S	L	S	N	A	T	I	I	N	E	E	V	L	N	A	M	L	K	E	V	C	T	A	L	L	E	A	D	V	N	I	K	L	V	K	Q	L	R	E	N	V	K	S	A	I	D	L	E	E	M	A	S	G	L	N	K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P
Template Known Secondary structure		T	T	T	T	T	T				S		S	S																				T	T	T	S	S	S	T	T												T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.
Predicted Secondary structure																																										.	.	.																									.	.	.	.						.	.	.	.
Query SS confidence																																										.	.	.																									.	.	.	.						.	.	.	.
Query Sequence		H	T	I	K	L	T	P	P	A	G	K	P	M	P	I	V	I	P	S	Y	N	G	A	R	K	Q	A	N	L	T	P	L	L	A	I	L	L	H	K	L	.	.	.	G	F	P	V	V	V	H	G	V	S	E	D	P	T	R	V	L	T	E	T	I	F	E	L	.	.	.	.	M	G	I	T	P	.	.	.	.
Query Conservation																																										.	.	.																									.	.	.	.						.	.	.	.
Alig confidence																									.	.	.	.	.	.												.	.	.												.	.												.	.	.	.						.	.	.	.
Template Conservation																									.	.	.	.	.	.																										.	.
Template Sequence		G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	.	.	.	.	.	.	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	.	.	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y
Template Known Secondary structure										S	S								S	T	T	S	S		.	.	.	.	.	.														T	T											.	.	S	S	S														T
Template Predicted Secondary structure																									.	.	.	.	.	.																										.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			138	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.											.	.	.	.	.	.
Query SS confidence		.											.	.	.	.	.	.
Query Sequence		.	T	L	H	G	G	Q	A	Q	A	K	.	.	.	.	.	.	L	D	E	H	Q	P	V	F	M	P	V	G	A	F	C	P	P	L	E	K	Q	L	A	M	R	W	R	M	G	V	R	N	S	A	H	T	L	A	K	L	A	T	P	F	A	E	G	E	A	L	R	L	S	S	V	S	H	P	E	Y	I	G	R
Query Conservation		.											.	.	.	.	.	.
Alig confidence		.											.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	.	.	.	.	.	.	.	.	.	.	.	.	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A
Template Known Secondary structure				S																T	T													T	T							.	.	.	.	.	.	.	.	.	.	.	.												S								T	T			T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.													.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		211	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		V	A	K	F	F	.	S	D	I	G	G	R	A	L	L	M	H	G	T	E	G
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K	L	D	G
Template Known Secondary structure																				T	T	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions