Job Description P30177 Confidence 27.58% Date Thu Jan 5 11:46:14 GMT 2012 Rank 71 Aligned Residues 209 % Identity 15% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50									.	.	.	.	.	.	.	.	.							60	.	.	.
Predicted Secondary structure																																.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence																																.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		D	Y	R	K	I	I	K	E	I	G	R	G	K	N	H	A	R	D	L	D	R	D	T	A	R	G	L	Y	A	H	.	.	.	.	M	L	N	G	E	V	P	D	L	E	L	G	G	V	L	I	A	L	R	.	.	.	.	.	.	.	.	I	K	G	E	G	E	A	E	M	.	.	.	.	.	.	L	G	F	Y
Query Conservation																																.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence																																.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	S	A	R	L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K
Template Known Secondary structure														T	T	T	S		S																			T	T	T																				T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.																							.	.	.	.
Query SS confidence																																															.	.	.																							.	.	.	.
Query Sequence		E	A	M	Q	N	H	T	I	K	L	T	P	P	A	G	K	P	M	P	I	V	I	P	S	Y	N	G	A	R	K	Q	A	N	L	T	P	L	L	A	I	L	L	H	K	L	.	.	.	G	F	P	V	V	V	H	G	V	S	E	D	P	T	R	V	L	T	E	T	I	F	.	.	.	.	E	L	M	G	I	T
Query Conservation																																															.	.	.																							.	.	.	.
Alig confidence																														.	.	.	.	.	.												.	.	.												.	.										.	.	.	.
Template Conservation																														.	.	.	.	.	.																										.	.
Template Sequence		E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	.	.	.	.	.	.	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	.	.	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P
Template Known Secondary structure				T	T	S	S								S	S									T	T	S	S		.	.	.	.	.	.														T	T										S	.	.	S																T
Template Predicted Secondary structure																														.	.	.	.	.	.																										.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		137						.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.											.	.	.	.	.	.
Query SS confidence			.	.	.	.	.											.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	T	L	H	G	G	Q	A	Q	A	K	.	.	.	.	.	.	L	D	E	H	Q	P	V	F	M	P	V	G	A	F	C	P	P	L	E	K	Q	L	A	M	R	W	R	M	G	V	R	N	S	A	H	T	L	A	K	L	A	T	P	F	A	E	G	E	A	L	R	L	S	S	V	S	H	P
Query Conservation			.	.	.	.	.											.	.	.	.	.	.
Alig confidence			.	.	.	.	.											.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G
Template Known Secondary structure							T	T																		T		S										S	S								.	.	.	.	.	.	.	.	.	.	.	.												S								S	S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200													.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		E	Y	I	G	R	V	A	K	F	F	S	D	.	I	G	G	R	A	L	L	M	H	G	T	E	G
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G
Template Known Secondary structure		S													S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions