Job Description P30177 Confidence 100.00% Date Thu Jan 5 11:46:14 GMT 2012 Rank 11 Aligned Residues 287 % Identity 17% Template c2dsjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		M	D	Y	R	K	I	I	K	E	I	G	R	G	K	N	H	A	R	D	L	D	R	D	T	A	R	G	L	Y	A	H	M	L	N	G	E	V	P	D	L	E	L	G	G	V	L	I	A	L	R	I	K	G	E	G	E	A	E	M	L	G	F	Y	E	A	M	Q	N	H	T	I	K	L	T	P	P	A	G	K	.
Query Conservation																																																																																	.
Alig confidence															.	.	.	.																																																															.
Template Conservation															.	.	.	.
Template Sequence		M	N	P	V	A	F	I	R	E	K	R	E	G	.	.	.	.	K	K	H	R	R	E	D	L	E	A	F	L	L	G	Y	L	R	D	E	V	P	D	Y	Q	V	S	A	W	L	M	A	A	F	L	R	G	L	D	P	E	E	T	L	W	L	T	E	T	M	A	R	S	G	K	V	L	D	L	S	G	L	P	H
Template Known Secondary structure													T	T	.	.	.	.																	T	T		S																															T	S	S	B					T	T	S	S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.
Predicted Secondary structure																																																								.																								.
Query SS confidence																																																								.																								.
Query Sequence		P	M	P	I	V	I	P	S	Y	N	G	A	R	K	Q	A	N	L	T	P	L	L	A	I	L	L	H	K	L	G	F	P	V	V	V	H	G	V	S	E	D	P	T	R	V	L	T	E	T	I	F	E	L	M	.	G	I	T	P	T	L	H	G	G	Q	A	Q	A	K	L	D	E	H	Q	P	V	F	M	.	P
Query Conservation																																																								.																								.
Alig confidence													.	.	.	.																																								.																								.
Template Conservation													.	.	.	.
Template Sequence		P	V	D	K	H	S	S	G	G	V	G	.	.	.	.	D	K	V	S	L	V	V	G	P	I	L	A	A	S	G	C	T	F	A	K	M	S	G	R	G	L	A	H	T	G	G	T	I	D	K	L	E	S	V	P	G	W	R	G	E	M	T	E	A	E	F	L	E	R	A	R	R	V	G	L	V	I	A	A	Q
Template Known Secondary structure		B							S	S	S		.	.	.	.		S	T										T	T	T		B									B	T	T	B								T	T	S	T	T																	T	S					S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		V	G	A	F	C	P	P	L	E	K	Q	L	A	M	R	W	R	M	G	V	R	N	S	A	H	T	L	A	K	L	A	T	P	F	A	E	G	E	A	L	R	L	S	S	V	S	H	P	E	Y	I	G	R	V	A	K	F	F	S	D	I	G	.	G	R	A	L	L	M	H	G	T	E	G	E	V	Y	A	N	P
Query Conservation																																																																.
Alig confidence																					.	.						.	.						.	.	.	.	.	.	.	.	.	.																				.																	.
Template Conservation																					.	.						.	.						.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		S	P	D	L	A	P	L	D	G	K	L	Y	A	L	R	D	V	T	A	.	.	T	V	E	S	V	.	.	P	L	I	A	S	.	.	.	.	.	.	.	.	.	.	S	I	M	S	K	K	L	A	A	G	A	R	S	I	V	L	D	V	K	V	G	R	G	A	F	M	K	T	L	E	E	A	R	L	L	A	.
Template Known Secondary structure		G	G	G	B	S												T	T	T	.	.						.	.						.	.	.	.	.	.	.	.	.	.										T		S									S	S	S	T	T		B										.
Template Predicted Secondary structure																					.	.						.	.						.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.			.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		Q	R	C	P	Q	I	N	L	I	D	R	E	G	M	R	V	L	Y	E	K	Q	D	T	A	G	S	E	L	L	P	Q	A	K	D	P	E	T	T	A	Q	W	I	E	R	C	L	A	G	S	E	P	.	.	I	P	E	S	L	K	I	Q	M	A	C	C	L	V	A	T	G	E	A	A	T	I	S	D	G	L	A
Query Conservation																																																					.	.
Alig confidence		.																											.	.	.																						.	.																					.	.	.	.	.	.
Template Conservation		.																											.	.	.																																												.	.	.	.	.	.
Template Sequence		.	K	T	M	V	A	I	G	Q	G	A	G	R	R	V	R	A	L	L	T	S	M	E	A	P	L	G	.	.	.	R	A	V	G	N	A	I	E	V	R	E	A	I	E	A	L	K	G	E	G	P	G	D	L	L	E	V	A	L	A	L	A	E	E	A	L	R	L	E	G	L	D	P	.	.	.	.	.	.	A
Template Known Secondary structure		.										T	T											S	S		S	S	.	.	.	S				S												T	T		S																			T	T			T	.	.	.	.	.	.
Template Predicted Secondary structure		.																											.	.	.																																												.	.	.	.	.	.
Template SS confidence
			218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.
		315	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	N	Q	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	R	K	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions