Job Description P30177 Confidence 100.00% Date Thu Jan 5 11:46:14 GMT 2012 Rank 12 Aligned Residues 284 % Identity 13% Template c1otpA_ PDB info PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		M	D	Y	R	K	I	I	K	E	I	G	R	G	K	N	H	A	R	D	L	D	R	D	T	A	R	G	L	Y	A	H	M	L	N	G	E	V	P	D	L	E	L	G	G	V	L	I	A	L	R	I	K	G	E	G	E	A	E	M	L	G	F	Y	E	A	M	Q	N	H	T	I	K	L	T	P	P	A	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence															.	.	.	.																																																													.	.	.
Template Conservation															.	.	.	.
Template Sequence		F	L	A	Q	E	I	I	R	K	K	R	D	G	.	.	.	.	H	A	L	S	D	E	E	I	R	F	F	I	N	G	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	F	H	D	M	T	M	P	E	R	V	S	L	T	M	A	M	R	D	S	G	T	V	L	D	W	K	S	L	H	L
Template Known Secondary structure													T	T	.	.	.	.																	T	T		S																																	S						T	T	T	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
			78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure		.																																																									.
Query SS confidence		.																																																									.
Query Sequence		.	G	K	P	M	P	I	V	I	P	S	Y	N	G	A	R	K	Q	A	N	L	T	P	L	L	A	I	L	L	H	K	L	G	F	P	V	V	V	H	G	V	S	E	D	P	T	R	V	L	T	E	T	I	F	E	L	M	.	G	I	T	P	T	L	H	G	G	Q	A	Q	A	K	L	D	E	H	Q	P	V	F
Query Conservation		.																																																									.
Alig confidence		.														.	.	.	.																																								.
Template Conservation																.	.	.	.
Template Sequence		N	G	P	I	V	D	K	H	S	T	G	G	V	G	.	.	.	.	D	V	T	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I
Template Known Secondary structure		S	S		B	B					S			T	T	.	.	.	.		T	T										T	T	T		B										S	T	T								T	T	S	T	T			S														T	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		156		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure			.																					.											.																	.	.	.	.	.	.	.	.
Query SS confidence			.																					.											.																	.	.	.	.	.	.	.	.
Query Sequence		M	.	P	V	G	A	F	C	P	P	L	E	K	Q	L	A	M	R	W	R	M	G	.	V	R	N	S	A	H	T	L	A	K	.	L	A	T	P	F	A	E	G	E	A	L	R	L	S	S	V	.	.	.	.	.	.	.	.	S	H	P	E	Y	I	G	R	V	A	K	F	F	S	D	I	G	G	R	A	L	L
Query Conservation			.																					.											.																	.	.	.	.	.	.	.	.
Alig confidence			.																					.											.																	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		I	G	Q	T	S	S	L	A	P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S	I	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	.	.	.	.
Template Known Secondary structure						S		S		T													T																		T	T			S									S	T	T		S	S	S	S																	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		M	H	G	T	E	G	E	V	Y	A	N	P	Q	R	C	P	Q	I	N	L	I	D	R	E	G	M	R	V	L	Y	E	K	Q	D	T	A	G	S	E	L	L	P	Q	A	K	D	P	E	T	T	A	Q	W	I	E	R	C	L	A	G	S	E	.	.	.	P	I	P	E	S	L	K	I	Q	M	A	C	C	L	V
Query Conservation																																																																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.																					.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	V	R	T	T	A	L	L	T	D	M	N	Q	V	L	A	.	.	.	S	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											S	S		S	S	.	.	.	S				S												T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
																							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	E	A	A	T	I	S	D	G	L	A	R	V	N	Q	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	K	L	A	K	D	D	A	E	A	R	A	K	L	Q	A	V	L
Template Known Secondary structure			T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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