Job Description P21165 Confidence 100.00% Date Thu Jan 5 11:37:53 GMT 2012 Rank 11 Aligned Residues 344 % Identity 22% Template c3q6dA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:proline dipeptidase; PDBTitle: xaa-pro dipeptidase from bacillus anthracis. Resolution 1.97 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	Q	E	R	T	R	D	A	L	A	R	F	K	L	D	A	L	L	I	H	S	G	E	L	F	N	V	F	L	D	D	H	P	Y	P	F	K	V	N	P	Q	F	K	A	W	V	P	V	T	Q	V	P	N	C	W	L	L	V	D	G	V	N	K	P	K	L	W	F	Y	L	P	V	D	Y	W	H	N	V
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		M	E	K	I	E	R	L	R	S	A	F	D	E	A	G	I	D	G	I	L	L	T	N	E	H	S	R	R	Y	M	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	T	A	G	V	V	L	I	S	K	K	R	A	Q	.	.	F	I	T	D	F	R	Y	V	E	Q	A	S
Template Known Secondary structure										T	T					T		S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S							S	S				.	.					G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		E	P	L	P	T	S	F	W	T	E	D	V	E	V	I	A	L	P	K	A	D	G	I	G	S	L	L	P	A	A	R	G	N	I	G	Y	I	G	P	V	.	.	P	E	R	A	L	Q	L	G	I	E	A	S	N	I	N	P	K	G	V	I	D	Y	L	H	Y	Y	R	S	F	K	T	E	Y	E	L	A	C	M
Query Conservation																																										.	.
Alig confidence															.	.	.	.																								.	.
Template Conservation															.	.	.	.
Template Sequence		K	Q	A	V	G	Y	E	I	V	Q	H	A	G	.	.	.	.	L	I	I	D	E	V	A	K	Q	V	K	E	L	G	I	Q	K	L	G	F	E	Q	D	T	L	T	Y	S	S	Y	S	A	H	K	E	A	I	D	A	E	F	I	P	T	S	G	L	V	E	K	L	R	L	I	K	T	D	S	E	I	K	I	L
Template Known Secondary structure				S	T	T	S						S	S	.	.	.	.														T		S						T	T	T	S														S							S							T	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		R	E	A	Q	K	M	A	V	N	G	H	R	A	A	E	E	A	F	R	S	G	M	S	E	F	D	I	N	I	A	Y	L	T	A	T	G	H	R	D	T	D	.	V	P	Y	S	N	I	V	A	L	N	E	H	A	A	V	L	H	Y	T	K	L	D	H	Q	A	P	E	E	M	R	S	F	L	L	D	A	G	A
Query Conservation																																											.
Alig confidence																																											.																				.
Template Conservation																																																															.
Template Sequence		K	E	A	A	Q	I	A	D	A	A	F	E	H	I	L	S	F	I	R	P	G	V	S	E	I	E	V	S	N	E	L	E	F	F	M	R	K	Q	G	A	T	S	S	S	F	D	I	I	V	A	S	G	L	R	S	A	L	P	H	G	V	.	A	S	E	K	V	I	E	T	G	D	F	V	T	L	D	F	G	A
Template Known Secondary structure																T	T	T			T	T		B															T	T		S			S	S							G	G	G	G	G		T	T		B	.			S		B			T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		E	Y	N	G	Y	A	A	D	L	T	R	T	W	S	A	K	.	S	D	N	D	Y	A	Q	L	V	K	D	V	N	D	E	Q	L	A	L	I	A	T	M	K	A	G	V	S	Y	V	D	Y	H	I	Q	F	H	Q	R	I	A	K	L	L	R	K	H	Q	I	I	T	D	M	S	E	E	A	M	V	E	N	D	L
Query Conservation																		.
Alig confidence																		.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	Y	K	G	Y	C	S	D	I	T	R	T	I	A	V	G	E	P	S	D	K	L	K	E	I	Y	N	I	V	L	E	A	Q	L	R	G	V	N	G	I	K	A	G	L	T	G	R	E	A	D	A	L	T	R	D	Y	I	T	E	K	G	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T											S	S																										T	T		B															T	T		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	P	F	M	P	H	G	I	G	H	P	L	G	L	Q	V	H	D	V	A	G	F	M	Q	D	D	S	G	T	H	L	A	A	P	A	K	Y	P	Y	L	R	C	T	R	I	L	Q	P	G	M	V	L	T	I	E	P	G	I	Y	F	I	E	S	L	L	A	P	W	R	E	G	Q	F	S	K	H	F	N	W
Query Conservation
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	Y	F	G	H	S	T	G	H	G	I	G	L	E	I	H	E	A	P	G	L	A	F	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	V	L	E	P	G	M	A	V	T	V	E	P	G	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	G	G			S		S					S	S	S	S	S						S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B			T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.																	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	I	E	A	L	K	P	F	G	G	I	R	I	E	D	N	V	V	I	H	E	N	N	V	E	N	M	T	R	D	L	K
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	I	P	G	I	G	G	V	R	I	E	D	D	I	I	V	T	S	E	G	N	E	V	I	T	K	S	P	K
Template Known Secondary structure		.	.	.	.	.		T	T	T						B							S	S	S							S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.