Job Description P21165 Confidence 100.00% Date Thu Jan 5 11:37:53 GMT 2012 Rank 28 Aligned Residues 256 % Identity 14% Template c2v6cA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: crystal structure of erbb3 binding protein 1 (ebp1) Resolution 2.50 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.												.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		R	S	F	K	T	E	Y	E	L	A	C	M	R	E	A	Q	K	M	A	V	N	G	H	R	A	A	E	E	A	F	R	S	G	M	S	E	F	D	I	N	I	A	Y	L	T	A	T	G	H	R	D	T	D	.	.	.	.	.	.	.	.	.	.	.	V	P	Y	S	N	I	V	A	L	N	E	H	A	A	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		Q	T	I	A	E	D	L	V	V	T	K	Y	K	M	G	G	D	I	A	N	R	V	L	R	S	L	V	E	A	S	S	S	G	V	S	V	L	S	L	C	E	K	G	D	A	M	I	M	E	E	T	G	K	I	F	K	K	E	K	E	M	K	K	G	I	A	F	P	T	S	I	S	V	N	N	C	V	C	H	F
Template Known Secondary structure				T	T	S																							T	T			T	T		B																	T	T	S		T	T		T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		V	L	H	Y	T	K	L	D	H	Q	A	P	E	E	M	R	S	F	L	L	D	A	G	A	E	Y	N	G	Y	A	A	D	L	T	R	T	W	S	A	K	S	.	.	.	.	.	.	D	N	D	Y	A	Q	L	V	K	D	V	N	D	E	Q	L	A	L	I	A	T	M	K	A	G	V	S	Y	V	D	Y	H	I
Query Conservation																																											.	.	.	.	.	.
Alig confidence							.																																				.	.	.	.	.	.
Template Conservation							.
Template Sequence		S	P	L	K	S	.	D	Q	D	Y	I	L	K	E	G	D	L	V	K	I	D	L	G	V	H	V	D	G	F	I	A	N	V	A	H	T	F	V	I	G	V	A	Q	G	T	Q	V	T	G	R	K	A	D	V	I	K	A	A	H	L	C	A	E	A	A	L	R	L	V	K	P	G	N	Q	N	T	Q	V	T	E
Template Known Secondary structure					S	S	.	S				B			T	T												T	T											T	T			T	T			B		T																					S	T	T		B
Template Predicted Secondary structure							.
Template SS confidence
		90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	H	Q	R	I	A	K	L	L	R	K	H	Q	I	I	T	D	M	S	E	E	A	M	V	E	N	D	L	T	G	P	F	M	P	H	G	I	G	H	P	L	G	L	Q	V	H	D	V	A	G	F	M	Q	D	D	S	G	T	H	L	A	A	P	A	K	Y	P	Y	L	R	C	T	R	I	L	Q	P	G	M
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		A	W	N	K	V	A	H	S	F	N	C	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	G	M	L	S	H	Q	L	K	Q	H	V	I	D	G	E	.	.	.	.	.	.	K	T	I	I	Q	N	P	T	D	Q	Q	K	K	D	H	E	K	A	E	F	E	V	H	E
Template Known Secondary structure										T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							B	T	T	B	S	S		S	.	.	.	.	.	.	S				S	S									S				B			T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.																					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.							.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.																																																	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	T	I	E	P	G	I	Y	F	I	E	S	L	L	A	P	W	R	E	G	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	H	F	N	W	Q	K	I
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	A	V	D	V	L	V	S	S	G	E	G	K	A	K	D	A	G	Q	R	T	T	I	Y	K	R	D	P	S	K	Q	Y	G	L	K	M	K	T	S	R	A	F	F	S	E	V	E	R	R	F	D	A	M	P	F	A	L	R	A	F	E	D	E	K	K	A	R	M	G	V	V	E	C	A	K	H	E	L	L
Template Known Secondary structure											S	S								S										T	T							S														T	T	T	S				G	G	G	S	S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		412	.	.	.	.	.					.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure								.	.	.	.				.	.
Query SS confidence								.	.	.	.				.	.
Query Sequence		E	A	L	K	P	F	.	.	.	.	G	G	I	.	.	R	I	E	D	N	V	V	I	H	E	N	N	V	E	N	M	T	R	D	L	K
Query Conservation								.	.	.	.				.	.
Alig confidence								.	.	.	.				.	.
Template Conservation
Template Sequence		Q	P	F	N	V	L	Y	E	R	E	G	E	F	V	A	Q	F	K	F	T	V	L	L	M	P	N	G	P	M	R	I	T	S	G	P	F
Template Known Secondary structure											T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions