Job Description P21165 Confidence 100.00% Date Thu Jan 5 11:37:53 GMT 2012 Rank 9 Aligned Residues 341 % Identity 23% Template c1wy2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the prolidase from pyrococcus horikoshii ot3 Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Q	E	R	T	R	D	A	L	A	R	F	K	L	D	A	L	L	I	H	S	G	E	L	F	N	V	F	L	D	D	H	P	Y	P	F	K	V	N	P	Q	F	K	A	W	V	P	V	T	Q	V	P	N	C	W	L	L	V	D	G	V	N	K	P	K	L	W	F	Y	L	P	V	D	Y	W	H	N	V	E
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.															.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.															.	.
Template Sequence		E	K	V	K	K	I	I	E	F	M	D	K	N	S	I	D	A	V	L	I	A	K	N	P	N	V	Y	Y	I	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	P	L	A	G	G	Y	I	L	I	T	G	E	.	.	S	A	T	L	Y	V	P	E	L	E	Y	E	M	A	.	.
Template Known Secondary structure														T	T		S						S									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S								S	S	.	.								G	G	G					.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.															.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																		.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	P	T	S	F	W	T	E	D	V	E	V	I	A	L	P	K	A	D	G	I	G	S	L	L	P	A	A	R	G	N	I	G	Y	I	G	P	V	P	E	R	A	L	Q	L	G	I	E	A	S	N	I	N	P	K	G	V	I	D	Y	L	H	Y	Y	R	S	F	K	T	E	Y	E	L	A	C	M	R	E	A
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	E	E	S	N	I	P	V	E	K	F	K	K	M	D	E	F	Y	K	A	L	E	G	I	K	S	L	G	I	E	S	S	L	P	Y	G	F	I	E	E	L	K	K	K	A	N	I	K	E	F	K	K	V	D	D	V	I	R	D	M	R	I	I	K	S	E	K	E	I	K	I	I	E	K	A
Template Known Secondary structure		.	.	.	.	.					S	S						S	S									T	T		S						T	T																														T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		Q	K	M	A	V	N	G	H	R	A	A	E	E	A	F	R	S	G	M	S	E	F	D	I	N	I	A	Y	L	T	A	T	G	H	R	D	T	D	.	V	P	Y	S	N	I	V	A	L	N	E	H	A	A	V	L	H	Y	T	K	L	D	H	Q	A	P	E	E	M	R	S	F	L	L	D	A	G	A	E	Y	N
Query Conservation																																								.
Alig confidence																																								.																				.
Template Conservation																																																												.
Template Sequence		C	E	I	A	D	K	A	V	M	A	A	I	E	E	I	T	E	G	K	K	E	R	E	V	A	A	K	V	E	Y	L	M	K	M	N	G	A	E	K	P	A	F	D	T	I	I	A	S	G	Y	R	S	A	L	P	H	G	V	.	A	S	D	K	R	I	E	R	G	D	L	V	V	I	D	L	G	A	L	Y	Q
Template Known Secondary structure																		T	T		B															T	T		S			S	S							G	G	G	G	G	S	T	T		B	.			S		B			T	T												T
Template Predicted Secondary structure																																																												.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		G	Y	A	A	D	L	T	R	T	W	S	A	K	.	S	D	N	D	Y	A	Q	L	V	K	D	V	N	D	E	Q	L	A	L	I	A	T	M	K	A	G	V	S	Y	V	D	Y	H	I	Q	F	H	Q	R	I	A	K	L	L	R	K	H	Q	I	I	T	D	M	S	E	E	A	M	V	E	N	D	L	T	G	P
Query Conservation															.
Alig confidence															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Y	N	S	D	I	T	R	T	I	V	V	G	S	P	N	E	K	Q	K	E	I	Y	E	I	V	L	E	A	Q	K	K	A	V	E	S	A	K	P	G	I	T	A	K	E	L	D	S	I	A	R	N	I	I	A	E	Y	G	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Template Known Secondary structure		T											S	S																										T	T	S	B															T	T		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																				.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	P	H	G	I	G	H	P	L	G	L	Q	V	H	D	V	A	G	F	M	Q	D	D	S	G	T	H	L	A	A	P	A	K	Y	P	Y	L	R	C	T	R	I	L	Q	P	G	M	V	L	T	I	E	P	G	I	Y	F	I	E	S	L	L	A	P	W	R	E	G	Q	F	S	K	H	F	N	W	Q	K	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	N	H	S	L	G	H	G	V	G	L	E	V	H	E	W	P	R	V	S	Q	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	V	L	R	E	G	M	V	I	T	I	E	P	G	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G			S		S					S	S	S	S	S						S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B			T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.																	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	K	P	F	G	G	I	R	I	E	D	N	V	V	I	H	E	N	N	V	E	N	M	T	R	D	L	K
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	I	P	K	I	G	G	V	R	I	E	D	T	I	L	I	T	K	N	G	S	K	R	L	T	K	T	E	R
Template Known Secondary structure		.	.		T	T	T						B							S	S	S				S	S				S
Template Predicted Secondary structure		.	.
Template SS confidence
				321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions