 |
Job Description | P0A7F9 | Confidence | 38.55% | Date | Thu Jan 5 11:05:35 GMT 2012 |
Rank | 27 | Aligned Residues | 75 |
% Identity | 20% | Template | c1jr2A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; |
PDBTitle: structure of uroporphyrinogen iii synthase
|
Resolution | 1.84 Å |
|
 |
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | |
|
|
|
. | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  | . | . | . | . |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
D | E | P | L | L | E | K | L | R | A | K | G | V | E | M | A | F | V | T | L | H | V | G | A | G | T | F | Q | P | V | R | V | D | T | I | E | D | H | I | M | H | S | E | . |
. |
. |
. |
Y | A | E | V | P | Q | D | V | V | D | A | V | L | A | A | K | A | R | G | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|   |
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |
|   |   |
|   |
|
|   |
| . | . | . | . |   |   |   |
|   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . | . | . |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | D | P | Y | I | R | E | L | G | L | Y | G | L | E | A | . |
. |
. |
. |
T | L | I | P | V | L | S | F | E | F | L | S | L | P | S | F | S | E | K | L | S | H | P | E | D | Y | G | G | L | I | F | T | S | P | R | A | V | E | A | A | E | L | C | L | E | Q | N | N | K | T | E | V | W | E | R | S | L | K | E | K | W |
Template Known Secondary structure |   |
B |
|  |  |  |  |  |  |  | T | T | T |
|  |  | . | . | . | . |  |  |  |  |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | T |
| G | G | G |
| S |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  | T |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . |  |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
|
|
|
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
|
|
|
249 | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . |
Predicted Secondary structure |   |
. | . | . |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
R | V | I | A | V | G | T | T | S | V | R | S | L | E | S | A |
Query Conservation |   |
. | . | . |
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
N | A | K | S | V | Y | V | V | G | N | A | T | A | S | L | V | S | K | I |
Template Known Secondary structure |   |
 |  | S |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|