Job Description P06971 Confidence 55.91% Date Thu Jan 5 10:59:36 GMT 2012 Rank 33 Aligned Residues 155 % Identity 14% Template d2fgqx1 SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.45

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		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	K	Y	V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	A	A	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		I	G	G	Y	V	A	Y	D	N	G	P	L	S	A	S	L	G	L	A	Q	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	V	G	G	L	A	T	D	R	D	E	I	T	L	G	A	S	Y	N	.	F	G	V	A	K	L	S	G	L	L	Q	Q	T	K	F	K	R	D	I	G	G	D	I	K
Template Known Secondary structure											S	S												.	.	.	.	.	.	.	.	.	.	.	.	.				T	T																.		S	S															T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.														.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.	.																	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		T	N	S	.	.	.	.	.	.	.	.	Y	M	L	G	A	S	A	P	V	G	G	.	.	.	.	V	G	E	V	K	L	Q	Y	A	L	Y	D	Q	K	A	I	D	.	.	.	.	.	.	.	S	K	A	H	Q	I	T	L	G	Y	V	H	N	L	S	K	.	.	.	.	R	T	A	L	Y	G	N	L	A	F
Template Known Secondary structure					.	.	.	.	.	.	.	.										T	T	.	.	.	.	T													G	G	G	T	.	.	.	.	.	.	.														S	S	S	.	.	.	.	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		238	.	240									.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.							.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	.	.	.	.	.	.	R	Q	V	V	A	T	A	T	F	R	F
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	N	K	D	A	S	T	L	G	L	Q	A	K	G	V	Y	A	G	G	V	Q	A	G	E	S	Q	T	G	V	Q	V	G	I	R	H	A	F
Template Known Secondary structure						T	T							B	T	T	T	B		S				T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions