Job Description P06971 Confidence 1.85% Date Thu Jan 5 10:59:36 GMT 2012 Rank 76 Aligned Residues 223 % Identity 9% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		R	D	D	K	Q	F	T	W	R	G	G	V	N	Y	L	F	D	N	.	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		Y	D	Q	T	V	S	G	L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	G	D	G	G	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I
Template Known Secondary structure																				T	T																		B	T	T	T	B																		S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.			.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.					.	650	.	.	.	.	.	.
Predicted Secondary structure																																						.	.																															.	.	.	.
Query SS confidence																																						.	.																															.	.	.	.
Query Sequence		M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	A	A	L	S	A	S	V	N	V	V	.	.	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	.	.	.	.	L	W	A	D	Y	T	F	F
Query Conservation																																						.	.																															.	.	.	.
Alig confidence																																						.	.																															.	.	.	.
Template Conservation
Template Sequence		A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A
Template Known Secondary structure				S	S	S																				B					G	G	G																						S	S	S
Template Predicted Secondary structure
Template SS confidence
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E
Query Conservation
Alig confidence																										.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	.	.	.	.	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S																					.	.	.	.	.	B														G	G	.	.	.	.	G	B												S	S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.																	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		928	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.						.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.					.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.
		737	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	V	A	T	A	T	F	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure										B
Template Predicted Secondary structure
Template SS confidence
		1000	.	.	.	.	.	.	.	.	.	1010

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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