Job Description P06971 Confidence 79.37% Date Thu Jan 5 10:59:36 GMT 2012 Rank 27 Aligned Residues 91 % Identity 19% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.			.	.	.	.	.	.	.	.	680
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		V	E	I	E	A	K	A	A	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	.	.	T	G	S	S	Y	G	D	P	A
Query Conservation																																																																							.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.											.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	.	.	.	.	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S
Template Known Secondary structure										S	S	S	S													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.													S	S	.	.	.	.	S													S	S					T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N
Query Conservation
Alig confidence																							.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	.	.	.	.	D	F	T	F	A	W	Q	T	T
Template Known Secondary structure		S																			S	S	.	.	.	.	S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions