Job Description P06971 Confidence 4.86% Date Thu Jan 5 10:59:36 GMT 2012 Rank 53 Aligned Residues 219 % Identity 13% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.					.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	.	.	.	.	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D	M	Q	D	L	S	A	W	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G	A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L
Template Known Secondary structure									S	T	T														T	T		S	S		B				B	T	T		T	T	S			S												T	T	T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		589	590	.	.	.																					.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Query Sequence		S	F	F	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	A	A	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		H	K	Q	R	V	G	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G	A	A	R	A	G	E	I	D	S	H	T	V	Y	G	L	F	S	A	G	.	I	G	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G
Template Known Secondary structure							T	T																T	T		T	T																.		T	T													S	S					B	T	T			G	G	G	S	T	T		B	T	T	B
Template Predicted Secondary structure																																												.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
							643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																											.	.	.																										.	.	.	.	.
Template Conservation																																																	.	.	.																										.	.	.	.	.
Template Sequence		N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L	I	G	M	V	R	Y	G	H	G	S	N	A	T	T	K	A	G	S	G	G	K	.	.	.	E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	.	.	.	.	.
Template Known Secondary structure					S	B	T												G	G	G	G	T		T	T														B		S	S		S				.	.	.														S	S	S	S	T	T							.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.																										.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Query Conservation
Alig confidence		.	.	.															.	.	.	.
Template Conservation		.	.	.															.	.	.	.
Template Sequence		.	.	.	H	A	S	N	R	R	S	F	N	S	D	F	D	Q	.	.	.	.	T	R	L	V	V	S	Y	P	L
Template Known Secondary structure		.	.	.							S	S	S						.	.	.	.
Template Predicted Secondary structure		.	.	.															.	.	.	.
Template SS confidence
					366	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions