Return to main results Retrieve Phyre Job Id

Job DescriptionP37759
Confidence96.78%DateThu Jan 5 11:57:31 GMT 2012
Rank331Aligned Residues109
% Identity14%Templatec7mdhA_
PDB info PDB header:chloroplastic malate dehydrogenaseChain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20...... ...30.........40.........50.........60.........70....
Predicted Secondary structure 







......




















Query SS confidence 

























. . . . . .















































Query Sequence  MKILVTGGAGFIGSAVVRHIINNTQD. . . . . . SVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQP
Query Conservation 












  

  

  
  ......
    
                   
  
  

 
   
         
Alig confidence 

























......

























.




















Template Conservation 


 



 
 

  

  
    
      


 
 

        
 



 
 
 .     
 
      

 



Template Sequence  VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY. PLLREVSIGIDPYEVFEDVDW
Template Known Secondary structure  TTTSTTTT
TT



GGGTTT
.TTS
TTT
S
Template Predicted Secondary structure 


















.










Template SS confidence 















































































   47..50.........60.........70.........80.........90.........100.... .....110.........120.....
 
   75....80.........90.........100.........110....
Predicted Secondary structure 















Query SS confidence 







































Query Sequence  DAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY
Query Conservation        
                        

  
    
Alig confidence 






....




























Template Conservation 





 ....  
 
 

 


  
  
 
 
   
   
Template Sequence  ALLIGAK. . . . PRGPGMERAALLDINGQIFADQGKALNAV
Template Known Secondary structure 



....


TT

Template Predicted Secondary structure 

....






Template SS confidence 







































   126...130.. .......140.........150.........160.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions