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Job DescriptionP37759
Confidence98.51%DateThu Jan 5 11:57:31 GMT 2012
Rank188Aligned Residues238
% Identity11%Templatec2wdzD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLA
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Template Sequence  CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSILVNS
Template Known Secondary structure  TTTSTT
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   13......20.........30.........40.........50.........60.........70.........80.........90..
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  AESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAY
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Template Sequence  AGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP. . . . . . . . . . . . . . . . QFA
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B
GGG

TTT


GGGTS

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B
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   93......100.........110.........120.........130.........140.........150... ...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  APSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR
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Template Sequence  SSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGE. . . . . . . . . PSEIAA
Template Known Secondary structure  TTT

BSSGGGTST
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   157..160.........170.........180.........190.........200.........210.........220. ......
 
   242.......250. ........260....
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Query Sequence  ALYTVVTEGK. . . AGETYNIGGHNEK
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Template Sequence  AALFLASPAASYVTGAILAVDGGYTV
Template Known Secondary structure  SGGGTT

S
STTGGG
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   228.230.........240.........250...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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