 |
Job Description | P55734 | Confidence | 23.52% | Date | Thu Jan 5 12:06:11 GMT 2012 |
Rank | 84 | Aligned Residues | 78 |
% Identity | 18% | Template | c1yn9B_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:polynucleotide 5'-phosphatase; |
PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate
|
Resolution | 1.50 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 30 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 60 | . | . | . | . | . | . | . | |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
| . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
S | P | H | D | A | Q | E | L | I | A | R | G | A | K | L | I | D | I | R | . |
. |
. |
. |
. |
. |
D | A | D | E | Y | L | R | E | H | I | P | . |
. |
. |
. |
. |
. |
E | A | D | L | A | P | L | S | V | L | E | Q | S | G | L | P | A | K | L | R | . |
. |
. |
. |
. |
. |
H | E | Q | I | I | F | H | C | Q | A | G | . |
Query Conservation |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|
|
|
|
|
| . | . | . | . | . | . |   |   |   |
|
|   |   |
|
|
|
| . | . | . | . | . | . |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |
|
|
|   |
|   |
|
| . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |
Template Sequence |   |
T | A | E | Q | I | V | K | Q | N | P | S | I | G | A | I | I | D | L | T | N | T | S | K | Y | Y | D | G | V | H | F | L | R | A | G | L | L | Y | K | K | I | Q | V | P | G | Q | T | L | P | P | E | S | I | V | Q | E | F | I | D | T | V | K | E | F | T | E | K | C | P | G | M | L | V | G | V | H | C | T | H | G | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |
|
| S |
| S |
| S |
|
| T |  |  |  |  |  | T | T |
|  |  |  |  |
|
|
|
| T | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T | S |  |  |  |  |  |
| S | S | S | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
44 | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
  |   |
68 | . | 70 | . | . | . | |
. | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  | . |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | T | S | N | N | . |
A | D | K | L | A | A | I | A | A | P | A |
Query Conservation |   |
  |
|
|   |   |
| . |
|   |   |
|   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|   |   |
|
|
|   |   |   |   |   |   |
Template Sequence |   |
N | R | T | G | Y | M | V | C | R | Y | L | M | H | T | L | G | I | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|