 |
Job Description | P0AEC5 | Confidence | 95.60% | Date | Thu Jan 5 11:23:00 GMT 2012 |
Rank | 208 | Aligned Residues | 104 |
% Identity | 13% | Template | c3ezxA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; |
PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein
|
Resolution | 2.56 Å |
|
 |
  |   |
661 | . | . | . | . | . | . | . | . | 670 | . | . | . | |
|
|
|
. | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | |
|
|
. | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | |
|
. | . | 720 | . | . | . | . | |
|
. | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |  |
|
|
|
|
|
| . | . |
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
Query Sequence |   |
T | D | E | S | K | L | A | M | T | V | M | A | V | . |
. |
. |
. |
D | D | N | P | A | N | L | K | L | I | G | A | L | L | E | D | M | V | Q | H | V | E | L | C | D | S | G | . |
. |
. |
H | Q | A | V | E | R | A | K | Q | M | P | F | D | L | I | L | M | . |
. |
D | I | Q | M | P | D | M | . |
. |
D | G | I | R | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|
| . | . | . | . |
|
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |
| . | . | . |   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
| . | . |
|   |   |
|
|   |
| . | . |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|   |
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | K | N | K | K | E | A | G | L | A | I | T | F | V | A | E | G | D | I | H | D | I | G | H | R | L | V | T | T | M | L | G | A | N | G | F | Q | I | V | D | L | G | V | D | V | L | N | E | N | V | V | E | E | A | A | K | H | K | G | E | K | V | L | L | V | G | S | A | L | M | T | T | S | M | L | G | Q | K | D | L |
Template Known Secondary structure |   |
T | S | S |
|
|
|
|
|  |  |  |  |  |  |
| T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |
| S | S |  |  |  |  | T |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
  |
  |   |
730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | E | L | I | H | Q | L | P | H | Q | Q | Q | T | P | V | I | A | V | T | A | H | A | M | A | G | Q | K | E | K | L | L | G | A | G | M | S | D | Y |
Query Conservation |   |
  |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|   | . |
|
|
|   |   |   | . | . |   |   |   |   |   |   |   |
|
|
|
|   |   |
Template Sequence |   |
M | D | R | L | N | E | E | K | L | R | D | S | V | K | C | M | . |
F | G | G | A | P | V | . |
. |
S | D | K | W | I | E | E | I | G | A | D | A | T |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
| G | G | G | S |  |  |  | . |  |  | S | S | S |
| . | . |
|  |  |  |  |  |  |  | T |
|
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  | . |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
. | . | . | . | . | . | |
|
. | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|