 |
Job Description | P0AEC5 | Confidence | 99.89% | Date | Thu Jan 5 11:23:00 GMT 2012 |
Rank | 98 | Aligned Residues | 121 |
% Identity | 24% | Template | c3eulB_ |
PDB info |
PDB header:transcription | Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional |
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
|
Resolution | 1.90 Å |
|
 |
  |   |
665 | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | |
|
. | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | A | M | T | V | M | A | V | D | D | N | P | A | N | L | K | L | I | G | A | L | L | E | D | M | V | Q | . |
. |
H | V | E | L | C | D | S | G | H | Q | A | V | E | R | A | K | Q | M | P | F | D | L | I | L | M | D | I | Q | M | P | D | M | D | G | I | R | A | C | E | L | I | H | Q | L | P | H | Q | Q | Q | T |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   | . | . |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |   |
Template Sequence |   |
P | E | K | V | R | V | V | V | G | D | D | H | P | L | F | R | E | G | V | V | R | A | L | S | L | S | G | S | V | N | V | V | G | E | A | D | D | G | A | A | A | L | E | L | I | K | A | H | L | P | D | V | A | L | L | D | Y | R | M | P | G | M | D | G | A | Q | V | A | A | A | V | R | S | . |
. |
Y | E | L | P | T |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  | T | T |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | . | . | T | T |
| S |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
. | 80 | . | . | . |
  |
  |   |
743 | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | V | I | A | V | T | A | H | A | M | A | G | Q | K | E | K | L | L | G | A | G | M | S | D | Y | L | A | K | P | I | E | E | E | R | L | H | N | L | L | L | R | Y | K | P | G |
Query Conservation |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|   |
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
Template Sequence |   |
R | V | L | L | I | S | A | H | D | E | P | A | I | V | Y | Q | A | L | Q | Q | G | A | A | G | F | L | L | K | D | S | T | R | T | E | I | V | K | A | V | L | D | C | A | K | G |
Template Known Secondary structure |   |
 |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|