 |
Job Description | P0AEC5 | Confidence | 99.91% | Date | Thu Jan 5 11:23:00 GMT 2012 |
Rank | 77 | Aligned Residues | 116 |
% Identity | 20% | Template | c3b2nA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:uncharacterized protein q99uf4; |
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
|
Resolution | 2.04 Å |
|
 |
  |   |
669 | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | |
|
. | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | V | M | A | V | D | D | N | P | A | N | L | K | L | I | G | A | L | L | E | D | M | V | Q | . |
. |
H | V | E | L | C | D | S | G | H | Q | A | V | E | R | A | K | Q | M | P | F | D | L | I | L | M | D | I | Q | M | P | D | M | D | G | I | R | A | C | E | L | I | H | Q | L | P | H | Q | Q | Q | T | P | V | I | A |
Query Conservation |   |
  |
|
|
|
|
|
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   | . | . |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
S | L | I | I | A | E | D | Q | N | M | L | R | Q | A | M | V | Q | L | I | K | L | H | G | D | F | E | I | L | A | D | T | D | N | G | L | D | A | M | K | L | I | E | E | Y | N | P | N | V | V | I | L | D | I | E | M | P | G | M | T | G | L | E | V | L | A | E | I | R | K | . |
. |
K | H | L | N | I | K | V | I | I |
Template Known Secondary structure |   |
 |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
| S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | . | . | T | T |
| S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
. | . | . | . | . | . | 80 | . | . |
  |
  |   |
747 | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | A | H | A | M | A | G | Q | K | E | K | L | L | G | A | G | M | S | D | Y | L | A | K | P | I | E | E | E | R | L | H | N | L | L | L | R | Y | K | P |
Query Conservation |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|   |
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
Template Sequence |   |
V | T | T | F | K | R | P | G | Y | F | E | K | A | V | V | N | D | V | D | A | Y | V | L | K | E | R | S | I | E | E | L | V | E | T | I | N | K | V | N | N |
Template Known Secondary structure |   |
 |  | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|