Job Description P0AEC5 Confidence 99.83% Date Thu Jan 5 11:23:00 GMT 2012 Rank 128 Aligned Residues 267 % Identity 18% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.
Predicted Secondary structure																							.	.																																																						.
Query SS confidence																							.	.																																																						.
Query Sequence		L	Q	Q	I	I	T	N	L	V	G	N	A	I	K	F	T	E	N	G	N	I	.	.	D	I	L	V	E	K	R	A	L	S	N	T	K	V	Q	I	E	V	Q	I	R	D	T	G	I	G	I	P	E	R	D	Q	S	R	L	F	Q	A	F	R	Q	A	D	A	S	I	S	R	R	H	G	G	T	.	G	L	G
Query Conservation																							.	.																																																						.
Alig confidence																							.	.																																																						.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y	G	L	G
Template Known Secondary structure															T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.		.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																.								.
Query SS confidence																.								.
Query Sequence		L	V	I	T	Q	K	L	V	N	E	M	G	G	D	.	I	S	F	H	S	Q	P	.	N	R	G	S	T	F	W	F	H	I	N	L	D	L	N	P	N	I	I	I	E	G	P	S	T	Q	C	L	A	G	K	R	L	A	Y	V	E	P	N	S	A	A	A	Q	C	T	L	D	I	L	S	E	T	P	L	E	V
Query Conservation																.								.
Alig confidence																.								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																								T	T		S											T	T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	S	P	T	F	S	A	L	P	P	A	H	Y	D	M	M	L	L	G	I	A	V	T	F	R	E	P	L	T	M	Q	H	E	R	L	A	K	A	V	S	M	T	D	F	L	M	L	A	L	P	C	H	A	Q	V	N	A	E	K	L	K	Q	D	G	I	G	A	C	L	L	K	P	L	T	P	T	R	L	L
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690						.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		P	A	L	T	E	F	C	H	H	K	Q	N	T	L	L	P	V	T	D	E	S	K	L	A	M	T	V	M	A	V	D	D	N	P	A	N	L	K	L	I	G	A	L	L	E	D	M	.	.	.	.	.	V	Q	H	V	E	L	C	D	S	G	H	Q	A	V	E	R	A	K	Q	M	P	F	D	L	I	L	M	D
Query Conservation																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I	K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	K	P	P	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.							S	S																																	T	T								T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		719	720	.	.	.	.	.	.	.	.	.			730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.					750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.		.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790
Predicted Secondary structure													.	.																					.	.	.	.																	.																								.
Query SS confidence													.	.																					.	.	.	.																	.																								.
Query Sequence		I	Q	M	P	D	M	D	G	I	R	A	.	.	C	E	L	I	H	Q	L	P	H	Q	Q	Q	T	P	V	I	A	V	T	A	.	.	.	.	H	A	M	A	G	Q	K	E	K	L	L	G	A	G	M	S	.	D	Y	L	A	K	P	I	E	E	E	R	L	H	N	L	L	L	R	Y	K	P	G	S	.	G	I
Query Conservation													.	.																					.	.	.	.																	.																								.
Alig confidence													.	.																					.	.	.	.																	.																								.
Template Conservation
Template Sequence		E	V	K	P	H	P	Y	G	V	D	R	E	E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I	K	E	F	L	V	N	E	F	Q	S	I	G	D	T	T	A	D	K	I	L	E	L	A	G	L	K	P	N	K	K	V	K	N	L	T	E	E	E	I	T	R	L	V	E	T	F	K	K	D	E	D	F	R
Template Known Secondary structure							G	G	G											T	T		S	S			B							T	T	S	T	T													T	T			S	S		B	S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		791	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	V	V	T	P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	S	A	D	S	L	S	V
Template Known Secondary structure					S	T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions