 |
Job Description | P0AEC5 | Confidence | 76.76% | Date | Thu Jan 5 11:23:00 GMT 2012 |
Rank | 238 | Aligned Residues | 103 |
% Identity | 14% | Template | c2og2A_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:putative signal recognition particle receptor; |
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
|
Resolution | 2.00 Å |
|
 |
  |   |
666 | . | . | . | 670 | . | . | . | . | . | . | |
|
|
. | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | M | T | V | M | A | V | D | D | N | . |
. |
. |
P | A | N | L | K | L | I | G | A | L | L | E | D | M | V | Q | H | V | E | L | C | D | S | . |
. |
. |
. |
. |
. |
. |
. |
G | H | Q | A | V | E | R | A | K | Q | M | P | F | D | L | I | L | M | D | I | Q | M | P | D | M | D | G | I | R | A | C | E | L | I | H |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|
| . | . | . |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   | . | . | . | . | . | . | . | . |
|   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |
Template Sequence |   |
E | G | T | K | V | L | M | A | A | G | D | T | F | R | A | A | A | S | D | Q | L | E | I | W | A | E | R | T | G | C | E | I | V | V | A | E | G | D | K | A | K | A | A | T | V | L | S | K | A | V | K | R | G | K | E | E | G | Y | D | V | V | L | C | D | T | S | G | R | L | H | T | N | Y | S | L | M | E | E | L | I |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
|
| S | S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
  |   |
735 | . | . | . | . | |
|
|
|
|
|
|
|
740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | |
|
|
|
. | . | . | . | 760 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | P | H | Q | . |
. |
. |
. |
. |
. |
. |
. |
Q | Q | T | P | V | I | A | V | T | A | H | A | M | A | G | Q | . |
. |
. |
. |
K | E | K | L | L | G | A | G | M | S | D | Y | L |
Query Conservation |   |
  |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |
|
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
A | C | K | K | A | V | G | K | I | V | S | G | A | P | N | E | I | L | L | V | L | D | G | N | T | G | L | N | M | L | P | Q | A | R | E | F | N | E | V | V | G | I | T | G | L | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S | T | T |
|
| S |  |  |  |  |  |  |  | G | G | G | G | G | G | G |  |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|