Job Description P0AEC5 Confidence 51.93% Date Thu Jan 5 11:23:00 GMT 2012 Rank 297 Aligned Residues 113 % Identity 11% Template c2g1uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710		.	.	.	.	.	.	.	.	.	720										.	.	.	.	.	.
Predicted Secondary structure																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Query SS confidence																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Query Sequence		S	K	L	A	M	T	V	M	A	V	D	D	N	P	A	N	L	K	L	I	G	A	L	L	E	D	M	V	Q	H	V	E	L	C	D	S	G	H	Q	A	V	E	R	A	K	Q	M	.	P	F	D	L	I	L	M	D	I	Q	.	.	.	.	.	.	.	.	.	M	P	D	M	D	G	.	.	.	.	.	.	.
Query Conservation																																																	.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Alig confidence																												.																					.											.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		K	Q	K	S	K	Y	I	V	I	F	G	C	G	R	L	G	S	L	I	A	N	L	A	S	S	S	.	G	H	S	V	V	V	V	D	K	N	E	Y	A	F	H	R	L	N	S	E	F	S	G	F	T	V	V	G	D	A	A	E	F	E	T	L	K	E	C	G	M	E	K	A	D	M	V	F	A	F	T	N	D
Template Known Secondary structure		.												S													T	.	T								S		G	G	G	G	G	G	S		T	T			S					S		T	T	S						T	T	T	G	G	G		S						S	S
Template Predicted Secondary structure																												.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
						727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	I	R	A	C	E	L	I	H	Q	L	P	H	Q	Q	Q	T	P	V	I	A	V	T	A	H	A	M	A	G	Q	K	E	K	L	L	G	A	G	M	S	D	Y	L	A	K	P	I	E	E	E	R	L	H	N	L	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.										.	.													.	.
Template Conservation															.	.													.	.
Template Sequence		D	S	T	N	F	F	I	S	M	N	A	R	Y	.	.	M	F	N	V	E	N	V	I	A	R	V	Y	.	.	D	P	E	K	I	K	I	F	E	E	N	G	I	K	T	I	C	P	A	V	L	M	I	E	K	V	K	E	F	I
Template Known Secondary structure															.	.	T	S			S							S	.	.	S	G	G	G						T	T	T
Template Predicted Secondary structure															.	.													.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions