Job Description P0AEC5 Confidence 97.43% Date Thu Jan 5 11:23:00 GMT 2012 Rank 180 Aligned Residues 138 % Identity 17% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		399	400	.	.	.	.	.	.	.																									.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		P	D	N	V	I	G	D	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	Q	Q	I	I	T	N	L	V	G	N	A	I	K	F	T	E	N	G	.	.	N	I	D	I	L	V	E	K	R	A	L	S	N	T	K	V	Q	I	E	V	Q	I	R	D	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.														.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		P	D	T	Y	I	G	S	V	E	L	V	T	Q	Q	M	W	V	Y	D	E	D	V	G	I	N	Y	R	E	V	T	F	V	P	G	L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D	P	E	N	N	.	.	.	.	.	L	I	S	I	W	N	N
Template Known Secondary structure		T								S											T	T	T																											G	G	G	T		T	T										T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.
		453	.	.	.	.	.	.													460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	G	I	P	E	R	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	S	R	L	F	Q	A	F	R	Q	A	D	A	S	I	S	R	R	H	G	G	T	G	L	G	L	V	I	T	Q	K	L	V	N	E	M	G	G	D	I	S	F	H	S	Q	P	N	R	G	S	T	F	W	F	H	I	N	L	D	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Template Conservation																																																															.	.	.
Template Sequence		G	K	G	I	P	V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	K	F	T	V	E	T	A	.	.	.	S	R	E	Y	K	K	M	F	K	Q	T	W	M	D	N	M
Template Known Secondary structure		S	S					S			T	T	T	T										S	S	S			S				G	G	G					S			S	S									T										.	.	.		G	G	G	T									T	T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	N	I	I	I	E	G	P	S	T	Q	C	L	A	G	K	R	L	A	Y	V	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	A	G	E	M	E	L	K	P	F	N	G	E	D	Y	T	C	I	T	F	Q	P	D
Template Known Secondary structure		T												S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions