Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	F	P	Q	R	V	N	G	W	A	L	Y	A	H	P	C	F	Q	E	T	Y	D	A	L	V	A	E	V	E	T	L	K	G	K	D	P	E	N	Y	Q	R	K	A	A	T	K	L	L	A	V	V	H	K	V	I	E	E	H	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																										?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	V	N	P	S	S	P	A	F	R	H	G	K	S	L	G	S	G	K	N	K	D	W	S	R	V	K	F	G	A	G	R	Y	R	L	F	F	R	Y	S	E	K	E	K	V	I	I	L	G	W	M	N	D	E	N	T	L	R	T	Y
Secondary structure
SS confidence
Disorder												?	?	?	?	?		?	?		?							?																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Sequence		G	K	K	T	D	A	Y	T	V	F	S	K	M	L	K	R	G	H	P	P	A	D	W	E	T	L	T	R	E	T	E	E	T	H
Secondary structure
SS confidence
Disorder		?	?													?	?	?	?	?													?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2khe chain A Region: 47 - 128 Aligned: 70 Modelled: 82 Confidence: 82.1% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:toxin-like protein; PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8 Phyre2 PDB 2otr chain A Region: 41 - 117 Aligned: 71 Modelled: 77 Confidence: 63.3% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hp0892; PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori Phyre2 PDB 3g5o chain C Region: 38 - 112 Aligned: 67 Modelled: 75 Confidence: 62.1% Identity: 21% PDB header:toxin/antitoxin Chain: C: PDB Molecule:uncharacterized protein rv2866; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis Phyre2 PDB 1wmi chain A domain 1 Region: 47 - 108 Aligned: 60 Modelled: 62 Confidence: 52.9% Identity: 20% Fold: RelE-like Superfamily: RelE-like Family: RelE-like Phyre2 PDB 2a6s chain A domain 1 Region: 23 - 110 Aligned: 75 Modelled: 87 Confidence: 35.3% Identity: 9% Fold: RelE-like Superfamily: RelE-like Family: YoeB/Txe-like Phyre2 PDB 2jek chain A domain 1 Region: 13 - 64 Aligned: 52 Modelled: 52 Confidence: 32.2% Identity: 12% Fold: Rv1873-like Superfamily: Rv1873-like Family: Rv1873-like Phyre2 PDB 2l9v chain A Region: 120 - 143 Aligned: 24 Modelled: 24 Confidence: 24.4% Identity: 25% PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a; PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state Phyre2 PDB 1b79 chain A Region: 36 - 64 Aligned: 29 Modelled: 29 Confidence: 20.1% Identity: 3% Fold: N-terminal domain of DnaB helicase Superfamily: N-terminal domain of DnaB helicase Family: N-terminal domain of DnaB helicase Phyre2 PDB 2zkr chain 3 Region: 81 - 89 Aligned: 9 Modelled: 9 Confidence: 17.8% Identity: 44% PDB header:ribosomal protein/rna Chain: 3: PDB Molecule:60s ribosomal protein l39e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1q46 chain A domain 1 Region: 118 - 146 Aligned: 23 Modelled: 29 Confidence: 16.9% Identity: 30% Fold: SAM domain-like Superfamily: eIF2alpha middle domain-like Family: eIF2alpha middle domain-like Phyre2 PDB 3kix chain Y Region: 58 - 112 Aligned: 49 Modelled: 55 Confidence: 16.8% Identity: 16% PDB header:ribosome Chain: Y: PDB Molecule: PDBTitle: structure of rele nuclease bound to the 70s ribosome2 (postcleavage state; part 3 of 4) Phyre2 PDB 3bpq chain D Region: 42 - 112 Aligned: 61 Modelled: 71 Confidence: 16.7% Identity: 10% PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii Phyre2 PDB 3qva chain B Region: 70 - 97 Aligned: 28 Modelled: 28 Confidence: 16.6% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:transthyretin-like protein; PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase Phyre2 PDB 3eln chain A domain 1 Region: 20 - 116 Aligned: 71 Modelled: 81 Confidence: 16.5% Identity: 25% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Cysteine dioxygenase type I Phyre2 PDB 1jwe chain A Region: 36 - 64 Aligned: 29 Modelled: 29 Confidence: 16.4% Identity: 3% Fold: N-terminal domain of DnaB helicase Superfamily: N-terminal domain of DnaB helicase Family: N-terminal domain of DnaB helicase Phyre2 PDB 1z8m chain A domain 1 Region: 41 - 117 Aligned: 69 Modelled: 77 Confidence: 15.7% Identity: 17% Fold: RelE-like Superfamily: RelE-like Family: RelE-like Phyre2 PDB 1cmc chain A Region: 111 - 144 Aligned: 34 Modelled: 34 Confidence: 15.4% Identity: 24% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Met repressor, MetJ (MetR) Phyre2 PDB 4a1b chain B Region: 64 - 89 Aligned: 26 Modelled: 26 Confidence: 15.1% Identity: 19% PDB header:ribosome Chain: B: PDB Molecule:rpl39; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. Phyre2 PDB 1tf5 chain A domain 2 Region: 116 - 136 Aligned: 21 Modelled: 21 Confidence: 14.6% Identity: 24% Fold: Helical scaffold and wing domains of SecA Superfamily: Helical scaffold and wing domains of SecA Family: Helical scaffold and wing domains of SecA Phyre2 PDB 3q2b chain A Region: 90 - 119 Aligned: 30 Modelled: 30 Confidence: 13.4% Identity: 7% PDB header:actin-binding protein Chain: A: PDB Molecule:cofilin/actin-depolymerizing factor homolog 1; PDBTitle: crystal structure of an actin depolymerizing factor Phyre2 1 c2kheA_ 2 c2otrA_ 3 c3g5oC_ 4 d1wmia1 5 d2a6sa1 6 d2jeka1 7 c2l9vA_ 8 d1b79a_ 9 c2zkr3_ 10 d1q46a1 11 c3kixy_ 12 c3bpqD_ 13 c3qvaB_ 14 d3elna1 15 d1jwea_ 16 d1z8ma1 17 d1cmca_ 18 c4a1bB_ 19 d1tf5a2 20 c3q2bA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kheA_ 82.1 17 PDB header:hydrolase Chain: A: PDB Molecule:toxin-like protein; PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8 2 c2otrA_ 63.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hp0892; PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori 3 c3g5oC_ 62.1 21 PDB header:toxin/antitoxin Chain: C: PDB Molecule:uncharacterized protein rv2866; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 4 d1wmia1 52.9 20 Fold:RelE-like Superfamily:RelE-like Family:RelE-like 5 d2a6sa1 35.3 9 Fold:RelE-like Superfamily:RelE-like Family:YoeB/Txe-like 6 d2jeka1 32.2 12 Fold:Rv1873-like Superfamily:Rv1873-like Family:Rv1873-like 7 c2l9vA_ 24.4 25 PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a; PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state 8 d1b79a_ 20.1 3 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 9 c2zkr3_ 17.8 44 PDB header:ribosomal protein/rna Chain: 3: PDB Molecule:60s ribosomal protein l39e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 10 d1q46a1 16.9 30 Fold:SAM domain-like Superfamily:eIF2alpha middle domain-like Family:eIF2alpha middle domain-like 11 c3kixy_ 16.8 16 PDB header:ribosome Chain: Y: PDB Molecule: PDBTitle: structure of rele nuclease bound to the 70s ribosome2 (postcleavage state; part 3 of 4) 12 c3bpqD_ 16.7 10 PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 13 c3qvaB_ 16.6 25 PDB header:hydrolase Chain: B: PDB Molecule:transthyretin-like protein; PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase 14 d3elna1 16.5 25 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 15 d1jwea_ 16.4 3 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 16 d1z8ma1 15.7 17 Fold:RelE-like Superfamily:RelE-like Family:RelE-like 17 d1cmca_ 15.4 24 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Met repressor, MetJ (MetR) 18 c4a1bB_ 15.1 19 PDB header:ribosome Chain: B: PDB Molecule:rpl39; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 19 d1tf5a2 14.6 24 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 20 c3q2bA_ 13.4 7 PDB header:actin-binding protein Chain: A: PDB Molecule:cofilin/actin-depolymerizing factor homolog 1; PDBTitle: crystal structure of an actin depolymerizing factor 21 d1rfya_ not modelled 12.9 52 Fold:Long alpha-hairpin Superfamily:Transcriptional repressor TraM Family:Transcriptional repressor TraM 22 d1nkta2 not modelled 12.8 29 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 23 c3pnxF_ not modelled 12.5 13 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 24 c3m9hB_ not modelled 12.4 36 PDB header:chaperone Chain: B: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa 25 d1np3a1 not modelled 12.1 21 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) 26 c1wloA_ not modelled 12.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 27 d1upgb_ not modelled 11.6 52 Fold:Long alpha-hairpin Superfamily:Transcriptional repressor TraM Family:Transcriptional repressor TraM 28 c2vzdD_ not modelled 11.6 29 PDB header:cell adhesion Chain: D: PDB Molecule:paxillin; PDBTitle: crystal structure of the c-terminal calponin homology2 domain of alpha parvin in complex with paxillin ld1 motif 29 d1m15a2 not modelled 11.5 32 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 30 c3pz8A_ not modelled 11.2 16 PDB header:signaling protein Chain: A: PDB Molecule:segment polarity protein dishevelled homolog dvl-1; PDBTitle: crystal structure of dvl1-dix(y17d) mutant 31 d3ecfa1 not modelled 11.1 46 Fold:Cystatin-like Superfamily:NTF2-like Family:Ava4193-like 32 c3gxvA_ not modelled 11.1 14 PDB header:hydrolase/replication Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 33 c2lhuA_ not modelled 11.1 36 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 34 d2ahob1 not modelled 11.0 41 Fold:SAM domain-like Superfamily:eIF2alpha middle domain-like Family:eIF2alpha middle domain-like 35 d1sqda2 not modelled 11.0 8 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 36 d1u6ra2 not modelled 10.6 25 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 37 c3oeiH_ not modelled 10.6 16 PDB header:toxin, protein binding Chain: H: PDB Molecule:relk (toxin rv3358); PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3) 38 d1qk1a2 not modelled 10.4 28 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 39 c2rjbD_ not modelled 10.3 8 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein ydcj (sf1787)2 from shigella flexneri which includes domain duf1338.3 northeast structural genomics consortium target sfr276 40 d1crka2 not modelled 10.1 26 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 41 c3l2eB_ not modelled 9.5 32 PDB header:transferase Chain: B: PDB Molecule:glycocyamine kinase beta chain; PDBTitle: glycocyamine kinase, alpha-beta heterodimer from marine worm2 namalycastis sp. 42 d1ni2a3 not modelled 9.4 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 43 c3jq3A_ not modelled 9.4 32 PDB header:transferase Chain: A: PDB Molecule:lombricine kinase; PDBTitle: crystal structure of lombricine kinase, complexed with substrate adp 44 d1h4ra3 not modelled 9.3 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 45 d1ef1a3 not modelled 9.3 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 46 c1rl9A_ not modelled 9.2 32 PDB header:transferase Chain: A: PDB Molecule:arginine kinase; PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex 47 c1x67A_ not modelled 9.2 16 PDB header:protein binding Chain: A: PDB Molecule:drebrin-like protein; PDBTitle: solution structure of the cofilin homology domain of hip-552 (drebrin-like protein) 48 d1g0wa2 not modelled 9.1 25 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 49 d3cipg1 not modelled 9.0 13 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 50 c3ju6A_ not modelled 8.6 19 PDB header:transferase Chain: A: PDB Molecule:arginine kinase; PDBTitle: crystal structure of dimeric arginine kinase in complex with2 amppnp and arginine 51 d1oo2a_ not modelled 8.6 31 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 52 c2kmaA_ not modelled 8.5 26 PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: nmr structure of the f0f1 double domain (residues 1-202) of2 the talin ferm domain 53 c2h1xB_ not modelled 8.4 22 PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) 54 c4a1aM_ not modelled 8.3 18 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 55 c2l7qA_ not modelled 8.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 56 d1qh4a2 not modelled 7.9 25 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 57 c2r5uD_ not modelled 7.9 10 PDB header:hydrolase Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the n-terminal domain of dnab helicase from2 mycobacterium tuberculosis 58 c1t0yA_ not modelled 7.5 18 PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: solution structure of a ubiquitin-like domain from tubulin-2 binding cofactor b 59 d1t0ya_ not modelled 7.5 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 60 c3csxA_ not modelled 7.5 40 PDB header:metal binding protein,unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structural characterization of a protein in the duf6832 family- crystal structure of cce_0567 from the3 cyanobacterium cyanothece 51142. 61 d1o66a_ not modelled 7.5 22 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 62 c2fh4C_ not modelled 7.4 19 PDB header:contractile protein Chain: C: PDB Molecule:gelsolin; PDBTitle: c-terminal half of gelsolin soaked in egta at ph 8 63 d1kgia_ not modelled 7.4 35 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 64 d1vrpa2 not modelled 7.3 25 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 65 d1t3ya1 not modelled 7.2 19 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Cofilin-like 66 d1qnaa2 not modelled 6.9 13 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 67 d1tdha3 not modelled 6.7 14 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 68 d2bo4a1 not modelled 6.7 45 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MGS-like 69 c3osqA_ not modelled 6.6 36 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 70 c3pz7A_ not modelled 6.6 18 PDB header:signaling protein Chain: A: PDB Molecule:dixin; PDBTitle: crystal structure of ccd1-dix domain 71 d2djfa1 not modelled 6.5 21 Fold:Streptavidin-like Superfamily:Dipeptidyl peptidase I (cathepsin C), exclusion domain Family:Dipeptidyl peptidase I (cathepsin C), exclusion domain 72 c2js5B_ not modelled 6.4 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 73 c1t0fC_ not modelled 6.2 57 PDB header:dna binding protein Chain: C: PDB Molecule:transposon tn7 transposition protein tnsc; PDBTitle: crystal structure of the tnsa/tnsc(504-555) complex 74 d1udma_ not modelled 6.1 18 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Cofilin-like 75 c2kj6A_ not modelled 6.1 18 PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: nmr solution structure of a tubulin folding cofactor b2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3436a 76 d1cjxa2 not modelled 6.0 31 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 77 d2g3ra1 not modelled 6.0 67 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 78 d1uzca_ not modelled 5.9 27 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 79 d2zpya3 not modelled 5.7 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 80 d1d0na4 not modelled 5.7 19 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 81 d1tfpa_ not modelled 5.6 31 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 82 d2fh1a1 not modelled 5.6 15 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 83 d2f7fa1 not modelled 5.6 20 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 84 c3k1lA_ not modelled 5.6 26 PDB header:ligase Chain: A: PDB Molecule:fancl; PDBTitle: crystal structure of fancl 85 c2rooA_ not modelled 5.4 20 PDB header:toxin Chain: A: PDB Molecule:neurotoxin magi-4; PDBTitle: solution structure of magi4, a spider toxin from macrothele2 gigas 86 d1f86a_ not modelled 5.4 27 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 87 d1kl9a1 not modelled 5.1 23 Fold:SAM domain-like Superfamily:eIF2alpha middle domain-like Family:eIF2alpha middle domain-like 88 c1i0eD_ not modelled 5.1 25 PDB header:transferase Chain: D: PDB Molecule:creatine kinase,m chain; PDBTitle: crystal structure of creatine kinase from human muscle

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0