Job Description P76318 Confidence 3.17% Date Thu Jan 5 12:21:45 GMT 2012 Rank 84 Aligned Residues 90 % Identity 12% Template c1qleB_ PDB info PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment Resolution 3.0 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		S	R	M	F	K	P	L	W	Q	H	G	R	A	I	C	F	A	D	G	W	F	E	W	K	.	K	E	G	D	K	K	Q	P	F	F	I	Y	R	A	D	G	Q	P	I	F	M	A	A	I	G	S	T	P	F	E	R	G	D	E	A	E	G	F	L	I	V	T	A	A	A	D	Q	G	L	V	D	I	H	D	R
Query Conservation																										.
Alig confidence																										.																																																.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		S	E	D	E	Y	L	L	A	T	D	N	P	V	V	V	P	V	G	K	K	V	L	V	Q	V	T	A	T	D	V	I	H	A	W	T	I	P	A	F	A	V	K	Q	D	A	V	P	G	R	I	A	Q	L	W	F	S	V	D	Q	E	G	V	Y	F	G	Q	C	S	E	L	C	G	.	.	.	I	N	H	A	Y
Template Known Secondary structure			G	G	G	S	S	S		B	S	S						T	T	S								B	S	S	S							T	T	T	T							T	T					B					S	S										S			S	.	.	.	T	T	S	S	S
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.
		163	.	.				.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		R	P	L	.	.	.	V	L	S	P	E	A	A	R	E	W	M
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		M	P	I	V	V	K	A	V	S	Q	E	K	Y	E	A	W	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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