Job Description P07822 Confidence 100.00% Date Thu Jan 5 11:00:35 GMT 2012 Rank 2 Aligned Residues 261 % Identity 21% Template c3eiwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa Resolution 1.60 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																										.																																		.
Query SS confidence																																										.																																		.
Query Sequence		A	I	D	P	N	R	I	V	A	L	E	W	L	P	V	E	L	L	L	A	L	G	I	V	P	Y	G	V	A	D	T	I	N	Y	R	L	W	V	S	E	.	P	P	L	P	D	S	V	I	D	V	G	L	R	T	E	P	N	L	E	L	L	T	E	M	K	P	S	F	M	V	W	S	A	.	G	Y	G	P	S
Query Conservation																																										.																																		.
Alig confidence																																										.																																		.
Template Conservation
Template Sequence		P	K	D	A	K	R	I	V	V	L	E	Y	S	F	A	D	A	L	A	A	L	D	V	K	P	V	G	I	A	D	D	G	K	K	K	R	I	I	K	P	V	R	E	K	I	G	D	Y	T	S	V	G	T	R	K	Q	P	N	L	E	E	I	S	K	L	K	P	D	L	I	I	A	D	S	S	R	H	K	G	I
Template Known Secondary structure			T	T							S	S										T	T				S					T	T		G	G	G	S										S					B		S	S	S	B								T			S						T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	M	L	A	R	I	A	P	G	R	G	F	N	F	S	D	G	K	Q	P	L	A	M	A	R	K	S	L	T	E	M	A	D	L	L	N	L	Q	S	A	A	E	T	H	L	A	Q	Y	E	D	F	I	R	S	M	K	P	R	F	V	K	R	G	A	R	P	L	L	L	T	T	L	I	D	P	R	H	M	L
Query Conservation
Alig confidence																		.	.																																													.
Template Conservation																		.	.																																													.
Template Sequence		N	K	E	L	N	K	I	A	P	T	L	S	L	K	S	F	.	.	D	G	D	Y	K	Q	N	I	N	S	F	K	T	I	A	K	A	L	N	K	E	K	E	G	E	K	R	L	A	E	H	D	K	L	I	N	K	Y	K	D	E	I	K	F	.	D	R	N	Q	K	V	L	P	A	V	V	A	K	A	G	L	L
Template Known Secondary structure									S							S	T	.	.	T																	T	T																									S	.		T	T	S									T	T
Template Predicted Secondary structure																		.	.																																													.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																											.	.	.
Query SS confidence																									.	.	.	.	.	.	.																											.	.	.
Query Sequence		V	F	G	P	N	S	L	F	Q	E	I	L	D	E	Y	G	I	P	N	A	W	Q	G	.	.	.	.	.	.	.	E	T	N	F	W	G	S	T	A	V	S	I	D	R	L	A	A	Y	K	D	V	D	V	L	C	F	.	.	.	D	H	D	N	S	K	D	M	D	A	L	M	A	T	P	L	W	Q	A	M	P
Query Conservation																									.	.	.	.	.	.	.																											.	.	.
Alig confidence																									.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		A	H	P	N	Y	S	Y	V	G	Q	F	L	N	E	L	G	F	K	N	A	L	S	D	D	V	T	K	G	L	S	K	Y	L	K	G	P	Y	L	Q	L	D	T	E	H	L	A	D	L	N	P	E	R	M	I	I	M	T	D	H	A	K	K	D	S	A	E	F	K	K	L	Q	E	D	A	T	W	K	K	L	N
Template Known Secondary structure					T	T	S									T	T			B	S	S							T	T	G	G	G			T	T															S							G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure													.							.
Query SS confidence													.							.
Query Sequence		F	V	R	A	G	R	F	Q	R	V	P	.	A	V	W	F	Y	G	.	A	T	L	S	A	M	H	F	V	R	V	L	D	N	A	I	G	G	K
Query Conservation													.							.
Alig confidence													.							.
Template Conservation
Template Sequence		A	V	K	N	N	R	V	D	I	V	D	R	D	V	W	A	R	S	R	G	L	I	S	S	E	E	M	A	K	E	L	V	E	L	S	K	K	E
Template Known Secondary structure					T	T											T	T	T		S																	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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