Job Description P07822 Confidence 46.59% Date Thu Jan 5 11:00:35 GMT 2012 Rank 45 Aligned Residues 231 % Identity 13% Template c2xdqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex Resolution 2.40 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.													.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	I	D	P	N	R	I	V	A	L	E	W	L	.	.	.	.	.	.	.	.	.	.	.	.	P	V	E	L	L	L	A	L	G	I	V	P	Y	G	V	A	D	T	I	N	Y	R	L	W	V	S	E	P	P	L	P	D	S	V	I	D	V	G	L	R	T	E	P	N	L	E	L	L	T	E	M	K	P	S
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	T	P	T	P	S	V	N	I	I	G	I	T	T	L	G	F	H	N	Q	H	D	C	R	E	L	K	Q	L	M	A	D	L	G	I	Q	V	N	L	V	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	T	V	H	D	L	Q	R	L	P	Q	A	W	F	N
Template Known Secondary structure		S			S	S										T	T		T	T																T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T	T	G	G	G	G	G	G	S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		F	M	V	W	S	A	G	Y	G	P	S	P	E	M	L	A	R	I	A	P	G	R	G	F	N	F	S	D	G	K	Q	P	L	A	M	A	R	K	S	L	T	E	M	A	D	L	L	N	L	Q	.	.	.	.	.	.	.	S	A	A	E	T	H	L	A	Q	Y	E	D	F	I	R	S	M	K	P	R	F	V	K
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence																										.	.																									.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		L	V	P	Y	R	E	I	G	G	L	T	A	Q	Y	L	E	R	E	F	G	Q	P	S	V	.	.	R	I	T	P	M	G	V	V	E	T	A	R	C	I	R	A	I	Q	G	V	L	N	A	Q	G	A	G	V	N	Y	E	A	F	I	E	Q	Q	T	R	E	V	S	Q	A	A	W	F	S	R	S	I	D	C	Q
Template Known Secondary structure						T	T	S	S																	.	.						S																	T	T	T																T									S
Template Predicted Secondary structure																										.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.																			220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	A	R	P	L	L	L	T	T	L	I	D	P	R	H	M	L	V	F	G	P	N	S	L	F	Q	E	I	L	D	E	Y	G	I	P	N	A	W	Q	G	E	T	N	F	W	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	V	S	I	D	R	L	A	A	Y	K	D	V
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		N	L	T	G	K	K	A	V	V	F	G	D	N	T	.	.	.	.	.	.	H	A	A	A	M	T	K	I	L	S	R	E	M	G	I	H	V	V	W	A	G	T	Y	C	K	Y	D	A	D	W	F	R	A	E	V	A	G	F	C	D	E	V	L	I	T	D	D	H	T	V	V	G	D	A	I	A	R	V	E	P
Template Known Secondary structure		T	T	T	T											.	.	.	.	.	.																							S		G	G	G									T	T	T	S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	L	C	F	D	H	D	N	S	K	D	M	D	A	L	M	A	T	P	L	W	Q	A	M	P	F	V	R	A	G	R	F	Q	R	V	P	A	V	W	F	Y	G	A	T	L	S	A	M	H	F	V	R	V	L	D	N	A	I
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		A	A	I	F	G	T	Q	M	E	R	H	V	G	K	R	L	N	I	P	C	G	V	I	A	A	P	I	H	I	Q	D	F	P	V	G	Y	R	P	F	L	.	.	.	G	Y	E	G	T	N	Q	L	V	D	L	I	Y	N	S	F
Template Known Secondary structure		S																T							S	S	S			G	G	G	S		S	S				S	S	.	.	.
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410				.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions