Job Description P00452 Confidence 100.00% Date Thu Jan 5 10:56:38 GMT 2012 Rank 4 Aligned Residues 632 % Identity 22% Template c1pemA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium Resolution 2.99 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	L	A	I	F	H	L	R	K	K	A	Y	G	Q	F	E	P	P	A	L	Y	D	H	V	V	K	M	V	E	M	G	K	Y	D	N	H	L	L	E	D	Y	T	E	E	E	F	K	Q	M	D	T	F	I	D	H	D	R	D	M	T	F	S	Y	A	A	V	K	Q	L	E	G	K	Y	L	V	Q	N	R
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence		I	D	A	F	F	A	T	H	V	R	P	H	S	V	T	.	.	.	F	A	S	Q	H	E	R	L	G	T	L	V	R	E	G	Y	Y	D	D	A	V	L	A	R	Y	D	R	A	F	V	L	R	L	F	E	H	A	H	A	S	G	F	R	F	Q	T	F	L	G	A	W	K	F	Y	T	S	Y	T	L	K	T	F
Template Known Secondary structure									T					B			.	.	.		S												T	T	S	B						T	T	S														T	S					S	S											T	S		B		T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		V	T	G	E	I	Y	E	S	A	Q	F	L	Y	I	L	V	A	A	C	L	F	S	N	Y	P	R	E	T	R	L	Q	Y	V	K	R	F	Y	D	A	V	S	T	F	K	I	S	L	P	T	P	I	M	S	G	V	R	T	.	P	T	R	Q	F	S	S	C	V	L	I	E	C	G	D	S	L	D	S	I	N	A
Query Conservation																																																											.
Alig confidence																								.	.	.	.	.																															.
Template Conservation																								.	.	.	.	.
Template Sequence		D	G	K	R	Y	L	E	H	F	E	D	R	V	T	M	V	A	L	T	L	A	Q	.	.	.	.	.	G	D	E	T	L	A	T	Q	L	T	D	E	M	L	S	G	R	F	Q	P	A	T	P	T	F	L	N	C	G	K	Q	Q	R	G	E	L	V	S	C	F	L	L	R	I	E	D	N	M	E	S	I	G	R
Template Known Secondary structure		T	S	S	S	B																	T	.	.	.	.	.	T														T	T	S											T	T	B	S	S				S										S	S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	S	A	I	V	K	Y	V	S	Q	R	A	G	I	G	I	N	A	G	R	I	R	A	L	G	S	P	I	R	G	G	E	A	F	H	T	G	C	I	P	F	Y	K	H	F	Q	T	A	V	K	S	C	S	Q	G	G	V	R	G	G	A	A	T	L	F	Y	P	M	W	H	L	E	V	E	S	L	L	V	L
Query Conservation
Alig confidence																																																									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		A	V	N	S	A	L	Q	L	S	K	R	G	G	G	V	A	F	L	L	S	N	L	R	E	A	G	A	P	I	K	R	I	E	N	Q	S	S	G	V	I	P	V	M	K	M	L	E	D	A	F	S	Y	A	N	Q	.	.	.	.	.	G	A	G	A	V	Y	L	H	A	H	H	P	D	I	L	R	F	L	D	T
Template Known Secondary structure											T	T	T								T	T	S			T	T			B	T	T	B	S	S					S														T			.	.	.	.	.									T	T	S	T	T							T
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	N	R	G	V	E	G	N	R	V	R	H	M	D	Y	G	V	Q	I	N	K	L	M	Y	T	R	L	L	K	G	E	D	I	T	L	F	S	P	S	D	V	P	G	L	Y	D	A	F	F	A	D	Q	E	E	F	E	R	L	Y	T	K	Y	E	K	D	D	S	I	R	K	Q	R	V	K	A	V	E	L	F
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		K	R	E	N	A	D	E	K	I	R	I	K	T	L	S	L	G	V	V	I	P	D	I	T	F	R	L	A	K	E	N	A	Q	M	A	L	F	S	P	Y	D	I	Q	R	R	Y	G	K	P	F	G	D	I	A	.	I	S	E	R	Y	D	E	L	I	A	D	P	H	V	R	K	T	Y	I	N	A	R	D	F	F
Template Known Secondary structure		T		T	T	S		T	T	S			S	S	S								S								T	T																S	S		G	G	G	S		.	T	T	T	T								T	T	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.					.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		S	L	M	M	Q	E	R	A	S	T	G	R	I	Y	I	Q	N	V	D	H	C	N	T	H	S	P	F	D	P	A	I	A	P	V	R	Q	S	N	L	C	L	E	I	A	L	P	T	K	P	L	N	D	V	N	.	.	.	.	D	E	N	G	E	I	A	L	C	T	L	S	A	F	N	L	G	A	I	N	N	L
Query Conservation																																																								.	.	.	.
Alig confidence																												.	.	.																										.	.	.	.
Template Conservation																												.	.	.
Template Sequence		Q	T	L	A	E	I	Q	F	E	S	G	Y	P	Y	I	M	F	E	D	T	V	N	R	A	N	P	.	.	.	I	A	G	R	I	N	M	S	N	L	C	S	E	I	L	Q	V	N	S	A	S	R	Y	D	D	N	L	D	Y	T	H	I	G	H	D	I	S	C	N	L	G	S	L	N	I	A	H	V	M	D	S
Template Known Secondary structure												S																.	.	.	S	S	S							T	T	S							B						T	T	S							B																T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.		.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		D	E	L	E	E	L	A	I	L	A	V	R	A	L	D	A	L	L	D	Y	Q	D	Y	.	P	I	P	A	A	K	R	G	A	M	G	R	R	T	L	G	I	G	V	I	N	F	A	Y	Y	L	A	K	H	G	K	R	Y	S	D	G	S	A	N	N	L	T	H	K	T	F	E	A	I	Q	Y	Y	L	L	K	A
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		P	D	I	G	R	T	V	E	T	A	I	R	G	L	T	A	V	S	D	M	S	H	I	R	S	V	P	S	I	A	A	G	N	A	A	S	H	A	I	G	L	G	Q	M	N	L	H	G	Y	L	A	R	E	G	I	A	Y	G	S	P	E	A	L	D	F	T	N	L	Y	F	Y	T	I	T	W	H	A	V	H	T
Template Known Secondary structure		S																							T	T	S																											T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.		.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.													.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure											.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	E	L	A	K	E	Q	G	.	A	C	P	W	F	N	E	T	T	Y	A	K	G	I	L	P	I	D	T	Y	K	K	D	L	D	T	I	A	N	E	.	.	.	.	.	.	.	.	.	.	.	.	P	L	H	Y	D	W	E	A	L	R	E	S	I	K	T	H	G	L	R	N	S	T	L	S	A	L	M	P
Query Conservation											.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	M	R	L	A	R	E	R	G	K	T	F	A	G	F	A	Q	S	R	Y	A	S	G	D	Y	F	T	Q	Y	L	Q	D	D	W	Q	P	K	T	A	K	V	R	A	L	F	A	R	S	G	I	T	L	P	T	R	E	M	W	L	K	L	R	D	D	V	M	R	Y	G	I	Y	N	Q	N	L	Q	A	V	P	P
Template Known Secondary structure										T				T	T	G	G	G	S					T								S	S			S		S		S										T																						S		S			B		B
Template Predicted Secondary structure
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		S	E	T	S	S	Q	I	S	N	A	T	N	G	I	E	P	P	R	G	Y	V	S	I	K	A	S	K	D	G	.	.	I	L	R	Q	V	V	P	D	Y	E	H	L	H	D	A	Y	E	L	L	W	E	M	P	G	N	D	G	Y	L	Q	L	V	G	I	M	Q	K	F	I	D	Q	S	I	S	A	N	T	N	Y
Query Conservation																															.	.
Alig confidence																															.	.																							.
Template Conservation																																																							.
Template Sequence		T	G	S	I	S	Y	I	N	H	A	T	S	S	I	H	P	I	V	A	K	I	E	I	R	K	E	G	K	T	G	R	V	Y	Y	P	A	P	F	M	T	N	E	N	L	D	M	Y	Q	D	A	Y	D	I	.	G	P	E	K	I	I	D	T	Y	A	E	A	T	R	H	V	D	Q	G	L	S	L	T	L	F	F
Template Known Secondary structure				T						T			S	S	S	S			S		S							S	T	T	S							T	T			T	T	T	G	G	G								.														T	T		S	S		B
Template Predicted Secondary structure																																																							.
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.		.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	S	R	F	P	S	G	K	V	P	M	Q	Q	L	L	K	D	L	L	T	A	Y	K	F	G	V	K	T	L	Y	Y	Q	N	T	R	D
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	P	D	T	A	T	T	R	D	I	N	K	A	Q	I	Y	A	W	R	K	G	I	K	S	L	Y	Y	I	R	L	R	Q
Template Known Secondary structure		.	.	.	.	.	.		T	T																	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.