Job Description P10902 Confidence 100.00% Date Thu Jan 5 11:32:21 GMT 2012 Rank 3 Aligned Residues 520 % Identity 34% Template c3p4rM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate Resolution 3.05 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		M	N	T	L	P	E	H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	.	.	Q	V	I	V	L	S	K	G	P	V	T	E	G	S	T	F	Y	A	Q	G	G	I	A	A	V	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I
Query Conservation																																	.	.	.
Alig confidence						.	.	.																									.	.	.
Template Conservation						.	.	.
Template Sequence		M	Q	T	F	.	.	.	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L
Template Known Secondary structure						.	.	.			S							S												T	T		T	T								S	S		G	G	G	S	G	G	G	G			S							S	S	S															T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		0	.	.	.				.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	R	H	A	V	E	F	V	A	S	N	A	R	S	C	V	Q	W	L	I	D	Q	G	V	L	F	D	T	H	I	Q	P	N	G	E	E	S	Y	H	L	T	R	E	G	G	H	S	H	R	R	I	L	H	A	A	D	A	T	G	R	E	V	E	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L
Query Conservation
Alig confidence																															.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		C	E	Q	D	V	V	D	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	.	.	.	.	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F
Template Known Secondary structure		S																						T	T					B	.	.	.	.		T	T	S	S	B						T	T		S	S							T	T															T	T		T	T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	S	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N
Query Conservation
Alig confidence															.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		D	E	H	F	V	L	D	I	L	V	D	D	G	.	.	.	.	.	.	.	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D
Template Known Secondary structure		T	T									S	S	S	.	.	.	.	.	.	.	B									T	T	T	T								S										G	G	G	S	S	S	B	S			T	T		S								G	G	G	T					S
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.													.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	F	.	.	.	.	.	.	.	.	.	.	.	.	D	E	R	G	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K	R	L	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		M	E	F	V	Q	Y	H	P	T	G	L	.	.	.	P	G	S	G	I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N
Template Known Secondary structure		T	T										.	.	.	T	T	T			B			T					T	T						T	T	S		B	G	G	G	T	T	T	S		S				S	S				T	T	S	G	G	G	S																T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		306	.							.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																													.
Query SS confidence				.	.	.	.	.	.																													.
Query Sequence		A	D	.	.	.	.	.	.	C	M	F	L	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	.	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	A	H	Y	T	C	G	G	V	M	V	D	D	H	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y
Query Conservation				.	.	.	.	.	.																													.
Alig confidence				.	.	.	.	.	.																													.
Template Conservation
Template Sequence		T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S
Template Known Secondary structure		S				T	T									T	T																					S				T	T	T	S																			T	T	S	B		S	S	B	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.									.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M	P	Y	A	H	D	I	S	T	L	P	P	W	.	.	.	.	.	.	.	.	D	E	S	R	V	E	N	P	D	E	R	V	V	I	Q	H	N	W	H	E	L	R	L	F	M	W	D	Y
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A	A	I	E	A	Q	A	A	G	V	E	Q	R	L	K	D	L	V	N	Q	D	G	G	E	N	W	A	K	I	R	D	E	M	G	L	A	M	E	E	G
Template Known Secondary structure			S	S	S	T	T	S			T	T																							T																									T					B
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.							.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.			520	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																																							.	.
Query SS confidence																																	.	.	.	.	.	.																																							.	.
Query Sequence		V	G	I	V	R	T	T	K	R	L	E	R	A	L	R	R	I	T	M	L	Q	Q	E	I	D	E	Y	Y	A	H	F	.	.	.	.	.	.	R	V	S	N	N	L	L	E	L	R	N	L	V	Q	V	A	E	L	I	V	R	C	A	M	M	R	K	E	S	R	G	L	H	F	T	L	D	Y	.	.	P	E	L
Query Conservation																																	.	.	.	.	.	.																																							.	.
Alig confidence																																	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		C	G	I	Y	R	T	P	E	L	M	Q	K	T	I	D	K	L	A	E	L	Q	E	R	F	K	R	V	R	I	T	D	T	S	S	V	F	N	T	D	L	L	Y	T	I	E	L	G	H	G	L	N	V	A	E	C	M	A	H	S	A	M	A	R	K	E	S	R	G	A	H	Q	R	L	D	E	G	C	T	E	R
Template Known Secondary structure		T	S	S	S	B																				T	T	B							S	T	T																													S		B	T	T	B		B		S	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		523	.	.	.			.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	T	H	S	.	.	G	P	S	I	L	S	P	G	N	H	Y
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		D	D	V	N	F	L	K	H	T	L	A	F	R	D	A	D	G
Template Known Secondary structure			T	T	T			S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.