Return to main results Retrieve Phyre Job Id

Job DescriptionP10902
Confidence100.00%DateThu Jan 5 11:32:21 GMT 2012
Rank3Aligned Residues520
% Identity34%Templatec3p4rM_
PDB info PDB header:oxidoreductaseChain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30. ........40.........50.........60.........70.......
Predicted Secondary structure 














...


























Query SS confidence 






























. . .













































Query Sequence  MNTLPEHSCDVLIIGSGAAGLSLALRLADQH. . . QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGI
Query Conservation       
   





 
 


 

  


 
... 
 



    

 
  
 


       

 
    
    
   
Alig confidence 



...























...













































Template Conservation 

  ...
 





 
 


 

  

  
    
 



    

 
  
 
         
       
        
Template Sequence  MQTF. . . QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWL
Template Known Secondary structure 
...
S

STT
TT


SS
GGGSGGGG

S



SSS

TT
Template Predicted Secondary structure 

...































Template SS confidence 















































































   0... ......10.........20.........30.........40.........50.........60.........70......
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  CDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVL
Query Conservation   
  

          
  
   

 
                                
      
        

 
 
Alig confidence 




























....














































Template Conservation      
           
  
   

 
  ....   
             
        
      
        

 
 
Template Sequence  CEQDVVDYFVHHCPTEMTQLELWGCPWSR. . . . RPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRF
Template Known Secondary structure  S
TT



B....
TTSSB


TT
SS



TT
TT
TT
Template Predicted Secondary structure 




....























Template SS confidence 















































































   77..80.........90.........100..... ....110.........120.........130.........140.........150..
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  ERSNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVAN
Query Conservation      
  

   
          
             
 
  






              



   
  


 
  
Alig confidence 












.......



























































Template Conservation         

   
....... 
 
        
    
 









              



   
  


 
  
Template Sequence  DEHFVLDILVDDG. . . . . . . HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRD
Template Known Secondary structure  TTSSS.......BTTTT
S





GGGSSSBS

TT
S
GGGT

S
Template Predicted Secondary structure 




.......
































Template SS confidence 















































































   153......160..... ....170.........180.........190.........200.........210.........220.....
 
   238.240.........250.........260.........270.........280. ........290.........300.....
Predicted Secondary structure 




















............










Query SS confidence 











































. . . . . . . . . . . .























Query Sequence  LEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDF. . . . . . . . . . . . DERGELAPRDIVARAIDHEMKRLG
Query Conservation 

     
                    
  


  
 

    ............               
  
     
Alig confidence 










...





























............























Template Conservation 

     
   ...              
  


  
 

                              
   
     
Template Sequence  MEFVQYHPTGL. . . PGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGN
Template Known Secondary structure  TT

...TTT

B

TTT

TTS
BGGGTTTS
S


SS


TTSGGGS
T
Template Predicted Secondary structure 

...
































Template SS confidence 















































































   226...230...... ...240.........250.........260.........270.........280.........290.........300..
 
   306. ..310.........320.........330..... ....340.........350.........360.........370........
Predicted Secondary structure 

......




.























Query SS confidence 

. . . . . .



























.










































Query Sequence  AD. . . . . . CMFLDISHKPADFIRQHFPMIYEKLLGL. GIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSY
Query Conservation    ......   

      
 
              .
 
     
 
 
    
 


 

    
 








 
 
Alig confidence 

......



























.










































Template Conservation              
        
               
 
       
 
    
 


 

    
 








 

Template Sequence  TISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSS
Template Known Secondary structure  STT
TT


S


TTTS




TTSB
SSBT
GGG
Template Predicted Secondary structure 





































Template SS confidence 















































































   303......310.........320.........330.........340.........350.........360.........370.........380..
 
   379380.........390.........400.........410.........420.. .......430.........440.........450
Predicted Secondary structure 






















........









Query SS confidence 











































. . . . . . . .



























Query Sequence  TGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLPPW. . . . . . . . DESRVENPDERVVIQHNWHELRLFMWDY
Query Conservation      

 
  
 

    
 
  

  

               ........                    
   
   
Alig confidence 











































........



























Template Conservation   
  

 
 

 

    
 
  

  

                                           
   
   
Template Sequence  VGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEG
Template Known Secondary structure 
SSSTTS

TT
T




T



B
Template Predicted Secondary structure 



























Template SS confidence 















































































   383......390.........400.........410.........420.........430.........440.........450.........460..
 
   451........460.........470.........480. ........490.........500.........510......... 520..
Predicted Secondary structure 





......











..


Query SS confidence 






























. . . . . .





































. .


Query Sequence  VGIVRTTKRLERALRRITMLQQEIDEYYAHF. . . . . . RVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDY. . PEL
Query Conservation      
    
  

  
  
           ......       
    
  
     


 
 



 
 
 

..
  
Alig confidence 






























......





































..


Template Conservation   
  
    
  

  
  
                        
    
  
     


 
 



 
 
 
   
  
Template Sequence  CGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTER
Template Known Secondary structure  TSSSB
TTB





STT


S
BTTB
B
STTTSS
Template Predicted Secondary structure 






























Template SS confidence 















































































   463......470.........480.........490.........500.........510.........520.........530.........540..
 
   523... ...530.......
Predicted Secondary structure 



..






Query SS confidence 



. .










Query Sequence  LTHS. . GPSILSPGNHY
Query Conservation      ..           
Alig confidence 



..










Template Conservation 
               
Template Sequence  DDVNFLKHTLAFRDADG
Template Known Secondary structure 
TTT

S
TTS
Template Predicted Secondary structure 





Template SS confidence 
















   543......550.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions