Job Description P10902 Confidence 99.89% Date Thu Jan 5 11:32:21 GMT 2012 Rank 32 Aligned Residues 371 % Identity 15% Template c3nlcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 Resolution 2.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		P	E	H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	G	S	T	F	Y	A	Q	G	G	I	A	A	V	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		E	N	L	T	E	R	P	I	V	I	G	F	G	P	C	G	L	F	A	G	L	V	L	A	Q	X	G	F	N	P	I	I	V	E	R	G	K	E	V	R	E	R	T	K	D	T	F	G	F	W	R	K	R	T	L	N	P	E	S	N	V	Q	F	G	E	G	G	A	G	T	F	S	D	G	K	L	Y	S	Q	V
Template Known Secondary structure		T	T											S													T	T								S	S																					T	T	S	S	S	S	S	S	T	T	G	G	G	T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	V	A	S	N	A	R	S	C	V	Q	W	L	I	D	Q	G	V	L	F	D	T	H	I	Q	P	N	G	E	E	S	Y	H	L	T	R	E	G	G	H	S	H	R	R	I	L	H	A	A	D	A	T	G	R	E	V	E	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	S	N	A	V
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	P	N	F	Y	G	R	K	V	I	T	E	F	V	E	A	G	A	P	E	E	I	L	Y	V	S	K	P	H	I	G	T	F	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	X	I	E	K	X	R	A	T	I	I	E	L	G	G	E	I	R	F	S	T	R	V	D
Template Known Secondary structure				T	T													T	T			G	G	G	G	T	B	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T					S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																			.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.												.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.												.	.	.	.	.
Template Sequence		D	L	H	X	E	D	G	.	.	.	.	.	.	.	Q	I	T	G	V	T	L	S	N	G	E	.	.	.	.	.	E	I	K	S	R	H	V	V	L	A	V	G	H	S	A	R	D	T	F	E	X	L	H	E	R	G	V	Y	X	E	A	K	P	F	S	V	G	F	R	I	E	H	K	Q	S	X	I	D	E	A
Template Known Secondary structure						S	S	S	.	.	.	.	.	.	.	B							T	T	S		.	.	.	.	.					S								T	T											T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.								.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.																				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	F	D	E	R	G	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	G	P	N	A	G	H	P	I	L	G	A	A	D	Y	K	L	V	H	H	C	K	N	G	R	T	V	Y	S	F	C	X	C	P	G	G	T	V	V	A	A	T	S	E	E	G	R	V	V	T	N	G	X	S	Q	Y	S	R	A	E	R	N	A	N	S	A	I	V	V	G	I	S	P	E	V	D	Y	P	G
Template Known Secondary structure			T	S	T	T	T	T		T	T	T		S										T	T	S																				S	T	T										T	T			S	S												B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.																																	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	L	G	A	D	C	M	F	L	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	L	A	G	I	R	F	Q	R	E	L	E	S	N	A	Y	K	L	G	G	E	N	Y	D	A	P	A	Q	K	I	G	D	F	L	K	G	R	D	P	S	Q	L	G	D	V	E	P	S	F	T	P	G	I	K	L	T	D	L	S	K	A	L	P	P	F	A	V	E	A	I	R	E	A	I	P	A	F	D	R
Template Known Secondary structure		S	T	T																	T	T	S	S	S													T		T	T					S	S					S	S							G	G	G	T	S																	T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		L	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	A	H	Y	T	C	G	G	V	M	V	D	D	H	.	.	.	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M	P
Query Conservation																														.	.	.
Alig confidence																														.	.	.																.						.	.	.	.	.	.	.	.
Template Conservation																																																.						.	.	.	.	.	.	.	.
Template Sequence		K	I	K	G	F	A	S	E	D	G	L	L	T	G	V	E	T	R	T	S	S	P	V	C	I	K	R	G	K	D	F	Q	S	V	N	L	K	G	F	Y	P	A	G	E	G	A	.	G	Y	A	G	G	.	.	.	.	.	.	.	.	I	L	S	A	G	I	D	G	I	K	V	A	E	A	V	A	R	D	I	V
Template Known Secondary structure		T	S	T	T	T	T		T	T										S	S		S						T	T	T	T	S		T	T		B	T									.	T	S			S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.						.	.	.	.	.	.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.									.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		412	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	X	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.