Job Description P10902 Confidence 100.00% Date Thu Jan 5 11:32:21 GMT 2012 Rank 19 Aligned Residues 353 % Identity 18% Template c2gqfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd Resolution 2.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	G	S	T	F	Y	A	Q	G	G	I	A	A	V	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E	F
Query Conservation																											.
Alig confidence																											.																																							.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		Q	Y	S	E	N	I	I	I	G	A	G	A	A	G	L	F	C	A	A	Q	L	A	K	L	G	K	S	V	T	V	F	D	N	G	K	K	I	G	R	K	I	L	X	S	G	G	G	F	C	N	F	T	N	L	E	V	T	P	A	H	Y	L	S	Q	.	.	.	.	.	N	P	H	F	V	K	S	A	L	A	R
Template Known Secondary structure					S							S													T	T								S	S	S	S	S							G	G	G	G	T						S	S			G	G	G				S	.	.	.	.	.		T	T	S	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	N	A	R	S	C	V	Q	W	L	I	D	Q	G	V	L	F	D	T	H	I	Q	P	N	G	E	E	S	Y	H	L	T	R	E	G	G	H	S	H	R	R	I	L	H	A	A	D	A	T	G	R	E	V	E	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	S	N	A	V	D	L
Query Conservation
Alig confidence			.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	.	.	T	N	W	D	F	I	S	L	V	A	E	Q	G	I	T	Y	H	E	K	E	L	G	Q	L	F	C	D	E	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	I	V	E	X	L	K	S	E	C	D	K	Y	G	A	K	I	L	L	R	S	E	V	S	Q	V
Template Known Secondary structure		S	.	.												T	T							S	T	T					T	T		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T						S
Template Predicted Secondary structure			.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Sequence		E	R	I	Q	N	.	.	.	.	.	.	.	.	.	.	D	E	K	V	R	F	V	L	Q	V	N	S	T	Q	W	Q	C	K	N	L	I	V	A	T	G	G	L	S	.	.	.	.	.	.	X	P	G	L	G	A	T	P	F	G	Y	Q	I	A	E	Q	F	G	I	P	V	I	P	P	R	A	S	L	V	P	F
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.		S	S								T	T						S									S	S	.	.	.	.	.	.		G	G	G	T			S									T	T										S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140											.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																								.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	R	G	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence		T	Y	R	E	T	.	.	.	D	K	F	L	T	A	L	S	G	I	S	L	P	V	T	I	T	A	L	C	G	K	S	F	Y	N	Q	L	L	F	T	H	R	G	I	S	G	P	A	V	L	Q	I	S	N	Y	W	Q	P	T	E	S	V	E	I	D	L	L	P	N	H	N	V	E	E	E	I	N	Q	A	K	Q
Template Known Secondary structure					G	G	.	.	.	G	G	G	G	G	G	G	T	T										T	T	S											S	S				S							T	T	T			T	T							S		S	S	S
Template Predicted Secondary structure							.	.	.
Template SS confidence
		200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.																.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.	.	.	.
Query Sequence		R	L	G	A	D	C	M	F	L	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M	I	Y	E	K	L	L	G	L	G	I	D	L	T	Q	E	P	V	P	I	V	P	.	.	A	A	H	Y	T	C	G	G	V	M	V	D	D	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.	.	.	.
Template Conservation
Template Sequence		S	S	P	K	Q	X	L	K	T	I	L	V	R	L	L	P	K	K	L	V	E	L	W	I	E	Q	G	I	V	Q	D	E	V	I	A	N	I	S	K	V	R	V	K	N	L	V	D	F	I	H	H	W	E	F	T	P	N	G	T	E	G	Y	R	T	A	E	V	T	X	G	G	V	D	T	K	V	I	S	S	K
Template Known Secondary structure				T	T	S	B						T	T	T	S											T	T	S	S				B	G	G	G																					S					T	T	T		S								G	G	G	B		T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
			362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	H	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R
Query Conservation		.
Alig confidence		.																	.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		T	X	E	S	N	Q	V	S	G	L	Y	F	I	G	E	V	L	.	.	.	.	D	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	Y	A	C	A	L	S	I	S	R	Q
Template Known Secondary structure		T		B	B	S	S	S	T	T					G	G	G	B	.	.	.	.	S					T	T	T																			T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.