Job Description P10902 Confidence 100.00% Date Thu Jan 5 11:32:21 GMT 2012 Rank 1 Aligned Residues 519 % Identity 31% Template c1yq4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone Resolution 2.33 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																														.																												.	.
Query SS confidence																														.																												.	.
Query Sequence		L	P	E	H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	G	S	T	F	Y	A	Q	G	G	I	A	A	V	F	D	.	.	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R
Query Conservation																														.																												.	.
Alig confidence																														.																												.	.
Template Conservation
Template Sequence		V	V	D	H	E	F	D	A	V	V	V	G	A	G	G	A	G	L	R	A	A	F	G	L	S	E	A	G	F	N	T	A	C	V	T	K	L	F	P	T	R	S	H	T	V	A	A	Q	G	G	I	N	A	A	L	G	N	M	E	D	D	N	W	R	W	H	F	Y	D	T	V	K	G	S	D	W	L	G	D	Q
Template Known Secondary structure								S							S													T	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S															T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		H	A	V	E	F	V	A	S	N	A	R	S	C	V	Q	W	L	I	D	Q	G	V	L	F	D	T	H	I	Q	P	N	G	E	E	S	Y	H	L	T	R	E	G	G	H	S	H	R	.	.	.	.	.	.	.	.	R	I	L	H	A	A	D	A	T	G	R	E	V	E	T	T	L	V	S	K	A	L	N	H	P
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.																		.	.	.	.	.	.	.	.																					.
Template Conservation																												.	.	.	.																																														.
Template Sequence		D	A	I	H	Y	M	T	E	Q	A	P	A	A	V	I	E	L	E	N	Y	G	M	P	F	S	R	.	.	.	.	T	E	E	G	K	I	Y	Q	R	A	F	G	G	Q	S	L	Q	F	G	K	G	G	Q	A	H	R	C	C	C	V	A	D	R	T	G	H	S	L	L	H	T	L	Y	G	R	.	S	L	R	Y
Template Known Secondary structure																					T	T					B	.	.	.	.		T	T	S	S	B						T	T		B	S	G	G	G	T	S		B							S	T	T														.		T	T	S
Template Predicted Secondary structure																												.	.	.	.																																														.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	R	V	L	E	R	S	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		D	T	S	Y	F	V	E	Y	F	A	L	D	L	L	M	E	N	G	.	.	.	.	.	.	.	E	C	R	G	V	I	A	L	C	I	E	D	G	T	I	H	R	F	R	A	K	N	T	V	I	A	T	G	G	Y	G	R	T	Y	F	S	C	T	S	A	H	T	S	T	G	D	G	T	A	M	V	T	R	A	G
Template Known Secondary structure								T										T	T	.	.	.	.	.	.	.										T	T	T	T								S										G	G	G	S	S	S	B	S	S		T	T													T
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.																							.	.	.	.
Query SS confidence																																																							.																							.	.	.	.
Query Sequence		C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	F	D	E	R	G	.	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K	R	L	G	A	D	.	.	.	.
Query Conservation																																																							.																							.	.	.	.
Alig confidence																					.	.	.																																.																							.	.	.	.
Template Conservation																					.	.	.
Template Sequence		L	P	C	Q	D	L	E	F	V	Q	F	H	P	T	G	I	Y	G	A	.	.	.	G	C	L	I	T	E	G	C	R	G	E	G	G	I	L	I	N	S	Q	G	E	R	F	M	E	R	Y	A	P	V	A	K	D	L	A	S	R	D	V	V	S	R	S	M	T	I	E	I	R	E	G	R	G	C	G	P	E	K
Template Known Secondary structure							T	T										T	T	T	.	.	.			B			T					T	T						T	T	S			T					S	T	T	T	G	G	G	S															T	T	T		B	T	T	T	T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
			308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.										.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure		.																													.																															.	.	.	.	.	.	.	.	.
Query SS confidence		.																													.																															.	.	.	.	.	.	.	.	.
Query Sequence		.	C	M	F	L	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	.	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	A	H	Y	T	C	G	G	V	M	V	D	D	H	G	R	T	.	.	.	.	.	.	.	.	.	D	V	E	G	L	Y	A	I	G	E	V
Query Conservation		.																													.																															.	.	.	.	.	.	.	.	.
Alig confidence		.																													.																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	H	V	Y	L	Q	L	H	H	L	P	P	Q	Q	L	A	T	R	L	P	G	I	S	E	T	A	M	I	F	A	G	V	D	V	T	K	E	P	I	P	V	L	P	T	V	H	Y	N	M	G	G	I	P	T	N	Y	K	G	Q	V	I	T	H	V	N	G	E	D	K	V	V	P	G	L	Y	A	C	G	E	A
Template Known Secondary structure			B						T	T	S																								T	T	T	S												S		B			B		T	T	S							T	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420								.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.
Query Sequence		S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M	P	Y	A	H	D	I	S	T	L	P	.	.	.	.	.	.	.	P	W	D	E	S	R	V	E	N	P	D	E	R	V	V	I	Q	H	N	W	H	E	L	R	L	F	M	W	D
Query Conservation																																														.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	A	S	V	H	G	A	N	R	L	G	A	N	S	L	L	D	L	V	V	F	G	R	A	C	A	L	T	I	A	E	T	C	K	P	G	E	P	V	P	S	I	K	P	N	A	G	E	E	S	V	A	N	L	D	K	L	R	F	A	D	G	T	I	R	T	S	E	A	R	L	N	M	Q	K	T	M	Q	S
Template Known Secondary structure					S	S	S	T	T	S			T	T	S																						T	T								T	T	T	T														B	S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.							.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		Y	V	G	I	V	R	T	T	K	R	L	E	R	A	L	R	R	I	T	M	L	Q	Q	E	I	D	E	Y	Y	A	H	F	.	.	.	.	.	.	R	V	S	N	N	L	L	E	L	R	N	L	V	Q	V	A	E	L	I	V	R	C	A	M	M	R	K	E	S	R	G	L	H	F	T	L	D	Y	P	E	L	L
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	A	V	F	R	T	G	S	I	L	Q	E	G	C	E	K	L	S	Q	I	Y	R	D	L	A	H	L	K	T	F	D	R	G	I	V	W	N	T	D	L	V	E	T	L	E	L	Q	N	L	M	L	C	A	L	Q	T	I	Y	G	A	E	A	R	K	E	S	R	G	A	H	A	R	E	D	Y	K	L	R	I
Template Known Secondary structure			S	S	S																				G	G	G	G								S	T	T																													S		B	T	T	B			T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	S	G	P	S	I	L	S	P	G	N	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	F	D	Y	S	K	P	L	Q	G	Q	Q	K
Template Known Secondary structure			S	S		T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.