Job Description P0AFI7 Confidence 98.27% Date Thu Jan 5 11:26:27 GMT 2012 Rank 43 Aligned Residues 121 % Identity 13% Template c2ol5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:pai 2 protein; PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus Resolution 2.50 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.																														.	.	.
Query SS confidence																																																.	.																														.	.	.
Query Sequence		T	L	F	E	R	W	L	S	Q	A	C	E	A	K	L	A	D	P	T	A	M	V	V	A	T	V	D	E	H	G	Q	P	Y	Q	R	I	V	L	L	K	H	Y	D	E	K	G	.	.	M	V	F	Y	T	N	L	G	S	R	K	A	H	Q	I	E	N	N	P	R	V	S	L	L	F	P	W	H	T	.	.	.
Query Conservation																																																.	.																														.	.	.
Alig confidence												.	.	.	.	.	.	.	.													.									.							.	.																				.										.	.	.
Template Conservation												.	.	.	.	.	.	.	.													.									.																												.
Template Sequence		D	V	A	Y	Q	V	I	E	E	N	.	.	.	.	.	.	.	.	S	F	A	T	L	V	S	X	H	Q	R	E	.	L	F	A	T	H	L	P	L	.	L	L	D	R	E	K	T	C	L	Y	G	H	F	A	R	S	N	P	Q	W	N	D	I	Q	H	Q	T	.	V	L	A	I	F	H	G	P	H	C	Y	I
Template Known Secondary structure												.	.	.	.	.	.	.	.										T	T		.									.				T	T	S	S								T	T		G	G	G	G	G	T	T	S	S		.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.													.									.																												.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.
																108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	Q	V	M	V	I	G	K	A	E	R	L	S	T	L	E	V	M	K	Y	F	H	S	R	P	R	D	S	Q	I	G	A	W	V	S	K	Q	S	S	R	I	S	A	R	G	I	L	E	S	K	F	L	E	L	K	Q	K	F	Q	Q	G	E	V	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	S	W	Y	E	T	N	Q	A	V	P	T	W	N	Y	V	A	V	H	V	Y	G	N	V	E	L	I	N	D	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	X	Q	S	L	H	D	X	V	E	K	Y	E	A	P	G	S	R	Y	Q	L	S
Template Known Secondary structure			T	T	S	S		T	T	S																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S		T	T					S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																										.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		174	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		L	P	.	.	.	.	.	.	S	F	W	G	G	F	R	V	S	L	E	Q	I	E
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	X	L	S	G	X	N	K	G	I	Q	A	F	K	I	I	I	K	R	I	E
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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