Job Description P16926 Confidence 20.55% Date Thu Jan 5 11:35:56 GMT 2012 Rank 132 Aligned Residues 64 % Identity 14% Template c2zkra_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		R	V	L	L	I	C	D	A	T	H	A	L	P	I	Q	V	L	R	N	D	I	R	V	I	A	A	G	N	G	C	T	D	D	L	Q	L	E	H	L	P	A	N	T	D	I	R	V	G	D	V	L	V	T	S	G	L	G	G	R	F	P	.	.	.	.	.	.	E	G	Y	P	V	A	V	V	S	S
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		V	K	D	I	I	H	D	P	G	R	G	A	P	L	A	K	.	.	.	.	.	.	.	V	V	F	R	D	P	Y	R	F	K	K	R	T	E	L	F	I	A	A	E	G	I	H	T	G	Q	F	V	Y	C	G	K	K	A	Q	L	N	I	G	N	V	L	P	V	G	T	M	P	E	G	T	I	V	C
Template Known Secondary structure									T	T	T	T						.	.	.	.	.	.	.				S	S			S	S	S	S	S							B	S	S			T	T						S	T	T			S		T	T					G	G	G	S		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions