Secondary structure and disorder prediction

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Sequence		M	I	D	P	K	K	I	E	Q	I	A	R	Q	V	H	E	S	M	P	K	G	I	R	E	F	G	E	D	V	E	K	K	I	R	Q	T	L	Q	A	Q	L	T	R	L	D	L	V	S	R	E	E	F	D	V	Q	T	Q	V	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Sequence		R	T	R	E	K	L	A	L	L	E	Q	R	I	S	E	L	E	N	R	S	T	E	I	K	K	Q	P	D	P	E	T	L	P	P	T	L
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dip chain A Region: 44 - 90 Aligned: 40 Modelled: 47 Confidence: 86.2% Identity: 38% PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures Phyre2 PDB 3p8c chain E Region: 23 - 85 Aligned: 55 Modelled: 63 Confidence: 75.5% Identity: 31% PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex Phyre2 PDB 3gw6 chain F Region: 47 - 77 Aligned: 29 Modelled: 31 Confidence: 71.2% Identity: 31% PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone Phyre2 PDB 1cos chain A Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 56.7% Identity: 30% PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 1cos chain B Region: 51 - 78 Aligned: 28 Modelled: 28 Confidence: 55.6% Identity: 29% PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 3pp5 chain A Region: 23 - 82 Aligned: 52 Modelled: 60 Confidence: 55.4% Identity: 29% PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1 Phyre2 PDB 1coi chain A Region: 66 - 80 Aligned: 15 Modelled: 15 Confidence: 54.0% Identity: 27% PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald Phyre2 PDB 1qce chain B Region: 52 - 83 Aligned: 32 Modelled: 32 Confidence: 53.4% Identity: 19% PDB header:viral protein Chain: B: PDB Molecule:protein (gp41); PDBTitle: solution nmr structure of ectodomain of siv gp41,2 restrained regularized mean structure plus 29 simulated3 annealing structures Phyre2 PDB 1cos chain C Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 52.8% Identity: 30% PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 2l7k chain A Region: 15 - 55 Aligned: 40 Modelled: 41 Confidence: 52.2% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130 Phyre2 PDB 3p8c chain D Region: 24 - 92 Aligned: 69 Modelled: 69 Confidence: 46.8% Identity: 16% PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex Phyre2 PDB 1aq5 chain C Region: 56 - 80 Aligned: 25 Modelled: 25 Confidence: 40.7% Identity: 28% PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures Phyre2 PDB 2jgo chain B Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 38.0% Identity: 26% PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c Phyre2 PDB 2jgo chain A Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 38.0% Identity: 26% PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c Phyre2 PDB 3ljm chain C Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 38.0% Identity: 26% PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c Phyre2 PDB 3ljm chain A Region: 51 - 77 Aligned: 27 Modelled: 27 Confidence: 38.0% Identity: 26% PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c Phyre2 PDB 2erg chain A Region: 62 - 83 Aligned: 22 Modelled: 22 Confidence: 37.9% Identity: 27% PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex Phyre2 PDB 2jgo chain C Region: 51 - 78 Aligned: 28 Modelled: 28 Confidence: 36.6% Identity: 25% PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c Phyre2 PDB 3ljm chain B Region: 51 - 78 Aligned: 28 Modelled: 28 Confidence: 36.6% Identity: 25% PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c Phyre2 PDB 3h5f chain C Region: 67 - 81 Aligned: 15 Modelled: 15 Confidence: 34.0% Identity: 27% PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. Phyre2 1 c1dipA_ 2 c3p8cE_ 3 c3gw6F_ 4 c1cosA_ 5 c1cosB_ 6 c3pp5A_ 7 c1coiA_ 8 c1qceB_ 9 c1cosC_ 10 c2l7kA_ 11 c3p8cD_ 12 c1aq5C_ 13 c2jgoB_ 14 c2jgoA_ 15 c3ljmC_ 16 c3ljmA_ 17 c2ergA_ 18 c2jgoC_ 19 c3ljmB_ 20 c3h5fC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1dipA_ 86.2 38 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 2 c3p8cE_ 75.5 31 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 3 c3gw6F_ 71.2 31 PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone 4 c1cosA_ 56.7 30 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 5 c1cosB_ 55.6 29 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 6 c3pp5A_ 55.4 29 PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1 7 c1coiA_ 54.0 27 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 8 c1qceB_ 53.4 19 PDB header:viral protein Chain: B: PDB Molecule:protein (gp41); PDBTitle: solution nmr structure of ectodomain of siv gp41,2 restrained regularized mean structure plus 29 simulated3 annealing structures 9 c1cosC_ 52.8 30 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 10 c2l7kA_ 52.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130 11 c3p8cD_ 46.8 16 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 12 c1aq5C_ 40.7 28 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 13 c2jgoB_ 38.0 26 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 14 c2jgoA_ 38.0 26 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 15 c3ljmC_ 38.0 26 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 16 c3ljmA_ 38.0 26 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 17 c2ergA_ 37.9 27 PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex 18 c2jgoC_ 36.6 25 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 19 c3ljmB_ 36.6 25 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 20 c3h5fC_ 34.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 21 c3h5fB_ not modelled 34.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 22 c3h5gA_ not modelled 34.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 23 c3h5gB_ not modelled 34.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 24 c3h5gC_ not modelled 34.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 25 c3h5fA_ not modelled 34.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 26 c1d7mA_ not modelled 33.5 39 PDB header:contractile protein Chain: A: PDB Molecule:cortexillin i; PDBTitle: coiled-coil dimerization domain from cortexillin i 27 d1grja1 not modelled 33.1 29 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 28 c1g6uB_ not modelled 31.7 36 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 29 c3p7kA_ not modelled 31.4 24 PDB header:viral protein Chain: A: PDB Molecule:gp41 peptide; PDBTitle: gp41 peptide 30 c3iynR_ not modelled 30.3 16 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 31 d2f23a1 not modelled 29.4 29 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 32 d1ohua_ not modelled 28.9 24 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 33 c1favA_ not modelled 28.4 22 PDB header:viral protein Chain: A: PDB Molecule:hiv-1 envelope protein chimera; PDBTitle: the structure of an hiv-1 specific cell entry inhibitor in complex2 with the hiv-1 gp41 trimeric core 34 c3m06F_ not modelled 27.1 14 PDB header:protein binding Chain: F: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of traf2 35 c2kscA_ not modelled 25.8 13 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 36 c2pnvA_ not modelled 25.5 22 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 37 c3a7pB_ not modelled 24.2 24 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 38 c1u0iA_ not modelled 23.7 35 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 39 c2zfcB_ not modelled 23.3 14 PDB header:viral protein Chain: B: PDB Molecule:hiv-1 gp41; PDBTitle: x-ray crystal structure of an engineered n-terminal hiv-12 gp41 trimer with enhanced stability and potency 40 c3cvfA_ not modelled 19.4 21 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 41 c3efgA_ not modelled 19.1 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 42 c2vrsC_ not modelled 18.9 20 PDB header:viral protein Chain: C: PDB Molecule:sigma-c capsid protein; PDBTitle: structure of avian reovirus sigma c 117-326, c2 crystal form 43 c3rylB_ not modelled 18.6 31 PDB header:protein binding Chain: B: PDB Molecule:protein vpa1370; PDBTitle: dimerization domain of vibrio parahemolyticus vopl 44 c1grjA_ not modelled 17.6 29 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 45 c3bpqC_ not modelled 16.7 29 PDB header:toxin Chain: C: PDB Molecule:antitoxin relb3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 46 c3hnwB_ not modelled 16.3 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 47 d1zy3a1 not modelled 16.0 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 48 c2yggA_ not modelled 15.8 40 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: complex of cambr and cam 49 c2kp8A_ not modelled 15.7 27 PDB header:unknown function Chain: A: PDB Molecule:model peptide; PDBTitle: ligand bound to a model peptide that mimics the open2 fusogenic form 50 d2oa5a1 not modelled 15.5 20 Fold:BLRF2-like Superfamily:BLRF2-like Family:BLRF2-like 51 c3pbjF_ not modelled 15.4 39 PDB header:de novo protein Chain: F: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 52 c3pbjB_ not modelled 15.4 39 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 53 c3pbjD_ not modelled 15.3 39 PDB header:de novo protein Chain: D: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 54 c3pbjC_ not modelled 15.3 39 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 55 c3pbjA_ not modelled 15.3 39 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 56 c3c4mA_ not modelled 15.0 16 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 57 c3dbzB_ not modelled 15.0 15 PDB header:sugar binding protein Chain: B: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: human surfactant protein d 58 d1q1va_ not modelled 14.5 27 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 59 d1ivsa1 not modelled 14.4 11 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 60 c2o2fA_ not modelled 14.2 16 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand 61 c2l5gA_ not modelled 13.9 33 PDB header:transcription regulator Chain: A: PDB Molecule:g protein pathway suppressor 2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 62 c1envA_ not modelled 13.9 23 PDB header:viral protein Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of PDBTitle: atomic structure of the ectodomain from hiv-1 gp41 63 c2xa0A_ not modelled 13.6 16 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide 64 c1go4F_ not modelled 13.3 27 PDB header:cell cycle Chain: F: PDB Molecule:mad1 (mitotic arrest deficient)-like 1; PDBTitle: crystal structure of mad1-mad2 reveals a conserved mad22 binding motif in mad1 and cdc20. 65 c3pbjE_ not modelled 13.3 28 PDB header:de novo protein Chain: E: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 66 c1by0A_ not modelled 13.1 24 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 67 c2x6pB_ not modelled 12.5 26 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 68 c2x6pA_ not modelled 12.5 26 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 69 d2p6va1 not modelled 12.4 19 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 70 d1cxzb_ not modelled 12.0 21 Fold:Long alpha-hairpin Superfamily:HR1 repeat Family:HR1 repeat 71 c1x8yA_ not modelled 11.9 31 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 72 c2x6pC_ not modelled 11.8 25 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 73 d1k4ta1 not modelled 11.7 20 Fold:Long alpha-hairpin Superfamily:Eukaryotic DNA topoisomerase I, dispensable insert domain Family:Eukaryotic DNA topoisomerase I, dispensable insert domain 74 d1urfa_ not modelled 11.6 13 Fold:Long alpha-hairpin Superfamily:HR1 repeat Family:HR1 repeat 75 d2rfra1 not modelled 11.2 38 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 76 d1pq1a_ not modelled 11.2 17 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 77 d2oa4a1 not modelled 10.9 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 78 c2akfB_ not modelled 10.6 34 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 79 c2akfA_ not modelled 10.6 34 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 80 c2akfC_ not modelled 10.6 34 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 81 c3gvmA_ not modelled 10.5 8 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 82 c2elfA_ not modelled 9.7 29 PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei 83 c2p4vA_ not modelled 9.6 11 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 84 c3exmA_ not modelled 9.4 16 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 85 c1kzzA_ not modelled 9.3 25 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 86 c3myrB_ not modelled 9.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 87 c2qnlA_ not modelled 9.1 36 PDB header:signaling protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative dna damage-inducible protein2 (chu_0679) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 88 c2jrtA_ not modelled 9.1 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 89 c2vofA_ not modelled 9.1 16 PDB header:apoptosis Chain: A: PDB Molecule:bcl-2-related protein a1; PDBTitle: structure of mouse a1 bound to the puma bh3-domain 90 c2a5yA_ not modelled 9.0 24 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator ced-9; PDBTitle: structure of a ced-4/ced-9 complex 91 c3m0dC_ not modelled 8.9 22 PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex 92 c1jekA_ not modelled 8.8 16 PDB header:viral protein Chain: A: PDB Molecule:env polyprotein; PDBTitle: visna tm core structure 93 d2it9a1 not modelled 8.6 12 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:PMN2A0962/syc2379c-like 94 d1pzra_ not modelled 8.5 30 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 95 c1jocA_ not modelled 8.5 15 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 96 c1p9iA_ not modelled 8.0 19 PDB header:unknown function Chain: A: PDB Molecule:cortexillin i/gcn4 hybrid peptide; PDBTitle: coiled-coil x-ray structure at 1.17 a resolution 97 c3ci9B_ not modelled 7.8 18 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 98 c2yv6A_ not modelled 7.7 14 PDB header:apoptosis Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer; PDBTitle: crystal structure of human bcl-2 family protein bak 99 c1pyiA_ not modelled 7.6 18 PDB header:transcription/dna Chain: A: PDB Molecule:protein (pyrimidine pathway regulator 1); PDBTitle: crystal structure of a ppr1-dna complex: dna recognition by2 proteins containing a zn2cys6 binuclear cluster

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0