Return to main results Retrieve Phyre Job Id

Job DescriptionQ46868
Confidence23.30%DateThu Jan 5 12:35:27 GMT 2012
Rank39Aligned Residues29
% Identity14%Templatec2zfcB_
PDB info PDB header:viral proteinChain: B: PDB Molecule:hiv-1 gp41; PDBTitle: x-ray crystal structure of an engineered n-terminal hiv-12 gp41 trimer with enhanced stability and potency
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.........70.........80
Predicted Secondary structure 
Query SS confidence 




























Query Sequence  FDVQTQVLLRTREKLALLEQRISELENRS
Query Conservation 



  

 


 





 


 

  
Alig confidence 




























Template Conservation 




 

 






 



  


 

Template Sequence  LEATQHAVQALVWGVKQLQARVLALERYI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 




























   20.........30.........40........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions