Job Description Q46868 Confidence 13.94% Date Thu Jan 5 12:35:27 GMT 2012 Rank 62 Aligned Residues 30 % Identity 23% Template c1envA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of PDBTitle: atomic structure of the ectodomain from hiv-1 gp41 Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	V	Q	T	Q	V	L	L	R	T	R	E	K	L	A	L	L	E	Q	R	I	S	E	L	E	N	R	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	A	Q	Q	H	L	L	Q	L	T	V	W	G	I	K	Q	L	Q	A	R	I	L	A	V	E	R	Y	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions